BAC Information

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BAC

Clone NameMSMg01-472M21
Chromosome12 (Build37)
Map Location 6,008,700 - 6,009,111
singlet/doubletsinglet
Overlap geneLOC672098
Upstream geneAtad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095
Downstream geneLOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M21.T7 (MSMg01no472_m21.b1)MSMg01-472M21.TJ (MSMg01no472_m21.g1)
ACCAG555252AG555253
length790750
length of high quality
(start - end)
239 (78 - 316)412 (82 - 493)
definitionCHROMAT_FILE: MSMg01no472_m21.b1 PHD_FILE: MSMg01no472_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:33 2005CHROMAT_FILE: MSMg01no472_m21.g1 PHD_FILE: MSMg01no472_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCATGTTGCAGCGAGGAATAAAAACCAGACACGAGAGCTGCA
GGAAGAGAGGCATATCAATTATGTAAGAGCCAGGGCAGATGGCCCCATCC
CCTCCCCCACCATTGGGTCTGGGGTAGAAAAGATGAAATAATAGATTTTA
GAAAGTAATTCAGGAGTAGGAGGAGAGGGGAGACGTTAGCAACATGGAGG
TTTGAGAGCCCAGCCACTGAACTGATTAAGGCATATTAAATATAGGCTGT
GTGTGTGTGTGTGTGTGTTTGTTTTTGCGCGCCCCCCCCTCCCCCCCCTC
CCCGCCTTCTTTTTTGCCCCCTTCTGTGGTTTTTGTGATTTATTCCCTAT
ATGCGCCCGGACGGTTACGGTTCCCTCCCCTTTTCTCCTCGCCCATTTCC
TTTCTTTTTTTTTCGCCTCCCTGTTCCCGTTCCTTCTTGCCTCCTTTCCT
GTTTCTCGATTTTCCCCTTTTTTTTTCCGCTTCTTCCTCTTATTCCTGCA
CTTCCTGCTGTTGCCTTTCTTATTTTTCCTTCTGGCCCCCCTTTCCTTAT
TTCCGGCGCATTGAGTTCCCGTTTATTTCGTTTTTTTCCACCTCTTCTCT
TTGATTCTTTTCGCCCCCCCCTATTGTTATCTTTTTTTTTTTTCCCCTAT
CCCTTTCTCTTCTTTTGCTCTCTTCGCCCCTTTTTTTTCTTTCCATCTTG
TTTTTTGCCTTCCCCTTATTTTTCGTCTTCTCTTTGTTTT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCAAGTAAATCTTCA
AAAGGAAGGTTGGTTACCTACTAGGTCTGCATTTACATTGGAATGATTCT
ATAAGCCTCTCCCTATTCAAATAGGTTGCATGTCTTTTTGTTTTTTCTTT
TGAAGTGTTAAAACATGAGTTTGTACAATTGAATTTTTCAGACAAGAAAG
TAGAGAGGCTTCTATTTACCTTGAAGAAGAAGTGAAATGTTAATTAAACA
TACACTTCACAAAATTTTCTTTCTAAGTGTCTTTCTTTGGGATTTAAACC
TAACTGTGTTCAGCATTAAATGAATCTCACTTTGGGGCTGTGCATTTCTT
GTCAACAAGATGCTTGGTTGTCTTTAGAACCTCATATTGCTTACAGAGCA
CCTCACTGGCTGCATAGTGGCAGGTTTTCTGAATGACTTCATGCTAGATT
GTATATCAATGAATGAAACAAGGCAGGCTTTCACTGTCCATGTGTGAGAG
GGAGGCTTTTGAAAAACTCTACATGTTTGTTGACATTTGTAAAAAAAAAG
GTTTTCCTGAAAAAAATAAATACAATGTTTGTTGGATATCAATCAAATTC
ATTTTTTAGGAAATTAAAAACCCAATGTTTTATTGAATCATTTCCATATA
TCCTCTCAATTAATAGGGATCCCTAGCATTCCTTGCTTTTAGTTATAAAN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m21.g1 MSMg01no472_m21.g1 CHROMAT_FILE:
MSMg01no472_m21.g1 PHD_FILE: MSMg01no472_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:33 2005
         (412 letters)



>mm_chr12_6008500_6009311
          Length = 812

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatcaagtaaatcttcaaaaggaaggttggttacctactaggtctgcatttacattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttatcaagtaaatcttcaaaaggaaggttggttacctactaggtctgcatttacattgg 553

                                                                       
Query: 61  aatgattctataagcctctccctattcaaataggttgcatgtctttttgttttttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aatgattctataagcctctccctattcaaataggttgcatgtctttttgttttttctttt 493

                                                                       
Query: 121 gaagtgttaaaacatgagtttgtacaattgaatttttcagacaagaaagtagagaggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaagtgttaaaacatgagtttgtacaattgaatttttcagacaagaaagtagagaggctt 433

                                                                       
Query: 181 ctatttaccttgaagaagaagtgaaatgttaattaaacatacacttcacaaaattttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctatttaccttgaagaagaagtgaaatgttaattaaacatacacttcacaaaattttctt 373

                                                                       
Query: 241 tctaagtgtctttctttgggatttaaacctaactgtgttcagcattaaatgaatctcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tctaagtgtctttctttgggatttaaacctaactgtgttcagcattaaatgaatctcact 313

                                                                       
Query: 301 ttggggctgtgcatttcttgtcaacaagatgcttggttgtctttagaacctcatattgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttggggctgtgcatttcttgtcaacaagatgcttggttgtctttagaacctcatattgct 253

                                                               
Query: 361 tacagagcacctcactggctgcatagtggcaggttttctgaatgacttcatg 412
           |||||||||||||||||||| || ||| |||| |||||||||||||||||||
Sbjct: 252 tacagagcacctcactggctacacagtagcagtttttctgaatgacttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)