BAC Information

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BAC

Clone NameMSMg01-473B09
Chromosome12 (Build37)
Map Location 107,668,819 - 107,669,147
singlet/doubletsinglet
Overlap genenone
Upstream geneD430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420
Downstream gene1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473B09.T7 (MSMg01no473_b09.b1)MSMg01-473B09.TJ (MSMg01no473_b09.g1)
ACCAG555468AG555469
length759765
length of high quality
(start - end)
249 (72 - 320)330 (77 - 406)
definitionCHROMAT_FILE: MSMg01no473_b09.b1 PHD_FILE: MSMg01no473_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:58 2005CHROMAT_FILE: MSMg01no473_b09.g1 PHD_FILE: MSMg01no473_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAACCCGCGGAAT
TCACCTGTGATTCACACCATGAGGCTGGAAGATCCAAGTTTCTGACCTGG
ATCTTGGCATGGAGATCTTGAGCAGAGTGGCCATAAAAAGCTTAGGCCCA
GGCGAGGAGGTACACAACTTGATCTGGGCCACACCTTCTACTGGAGGCCT
TCATAAGGACACTGGAAGATGAAGACTCACTGTTCTTCACCTGCTTGCAC
TTACTTGCCAGCACATCTGTTGGAACCTACTTCTAAAGAAGAGCAGCTGA
AACAACTAGCCTTGTGGGACTGTTTTTTTACTAGATTCTAGATCCTTGGA
CTTCCCATCCACAGCAGCCCATTGTTGGGGAGTTGGACTACAGACCGTAA
GTCATCACAATGAAGTCCCTCAATATATAGAGACATTCCATACATTCTGT
GACTCTAGAGAACCCTGACTAATACAGTTGCCTTAACAGCAGCTTCAGGC
CTTCCTGTTCAACACCTACTCTGCCTTTCTGTATTCGCTGCAATTTATTT
AATCTGTCTTCATCACCATCACCATCCCACTGTCATCCTCCCTGTCTTCC
CCACCGTTATCACCAGTATCACAAAGATCATTCTTACCTCATGACCACCT
CCACCACATCGTCATCTGTTTCTCCATCAATCATGACAGTCATCCTCAGT
ATCTCAACCTTCCTCACCATGACTACCTCTTTAACATTCTCATCACCGCC
GCTTATTAT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCNAATCAGAGAACCAGGACCTTGTTGAAGGGAGTG
AACTTGCAGCTATATATTTTCCTGCTTCTCTGTCTTGTCTGCCTTCTTAC
CCCCTTCCCTTCCTCCCCTCGCTTTCCCTCTCCTCCCCTCCCCTCCCCTT
CTGCTCTTTCCCTCTGTGGCTGGCTAGAGACCAAACCATGAAGCAAAGCG
AACCTTTCCCCCTTTCAAGTTGACTCTGCCCTAGTATCTCATCACTGCAA
ATCAAGGTTTCTGCTCTCTCGTCCGTCCTCATCTGTCCTCTCGCCCTTCT
CCTTCCTGTTGTGACTTCTGTGGACCCACAAGAAGTGTGACATACGTCTC
CAGCCTCTGTAGAGAAGGAAGACCAAAGGGAGCAGGAAAGGACAAGGACG
CTGGCCCTCGCCAGGACGCTGGTTGTCTTTGCTGGTTCTGGTTCTGCCTG
GGTTCTGCCTGAGTTCTGCGAAAGGAAACAATCCTCTTCTGAGTCTGCCC
CAAGCTTTGCACACAACCGAAGCTCCCTTTTATCTTGCGGACCCTTTGTT
CACGATGCTCACAGATATGAGGTACCTGTGTTCATAGCGGCCTCTCTTTC
TCGTTTGAGGTACCCCCTTTGCCCCCTTGACTCAATGTTCTTGTTTTTCC
CCCCATGTCCTTTGACGTTAGGTGCCCCCTGTCCCTGGTAATACCTCCCT
ACTGCCCTCTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_b09.g1 MSMg01no473_b09.g1 CHROMAT_FILE:
MSMg01no473_b09.g1 PHD_FILE: MSMg01no473_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:58 2005
         (330 letters)



>mm_chr12_107668496_107669225
          Length = 730

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaccttgttgaagggagtgaacttgcagctatatattttcctgcttctctgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 accaggaccttgttgaagggagtgaacttgcagctatatattttcctgcttctctgtctt 593

                                                                       
Query: 61  gtctgccttcttacccccttcccttcctcccctcgctttccctctcctcccctcccctcc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtctgccttcttacccgcttcccttcctcccctcgctttccctctcctcccctcccctcc 533

                                                                       
Query: 121 ccttctgctctttccctctgtggctggctagagaccaaaccatgaagcaaagcgaacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccttctgctctttccctctgtggctggctagagaccaaaccatgaagcaaagcgaacctt 473

                                                                       
Query: 181 tccccctttcaagttgactctgccctagtatctcatcactgcaaatcaaggtttctgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tccccctttcaagttgactctgccctagtatctcatcactgcaaatcaaggtttctgctc 413

                                                                       
Query: 241 tctcgtccgtcctcatctgtcctctcgcccttctccttcctgttgtgacttctgtggacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctcgtccgtcctcatctgtcctctcgcccttctccttcctgttgtgacttctgtggacc 353

                                        
Query: 301 cacaagaagtgtgacatacgtctccagcc 329
           |||||||||||||||||||||||||||||
Sbjct: 352 cacaagaagtgtgacatacgtctccagcc 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)