BAC Information

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BAC

Clone NameMSMg01-473F05
Chromosome12 (Build37)
Map Location 98,412,731 - 98,586,007
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473F05.T7 (MSMg01no473_f05.b1)MSMg01-473F05.TJ (MSMg01no473_f05.g1)
ACCAG555651AG555652
length770785
length of high quality
(start - end)		634 (43 - 676)501 (71 - 571)
definitionCHROMAT_FILE: MSMg01no473_f05.b1 PHD_FILE: MSMg01no473_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:21 2005CHROMAT_FILE: MSMg01no473_f05.g1 PHD_FILE: MSMg01no473_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,412,731 - 98,413,361)(98,585,507 - 98,586,007)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCTTCTTTTTCTCCTCCAAGACTGAAATGGTGGGGATAGTTGGTATG
ATGATACTGTTAAACAACTCCCACCACAGCTAATAAAAAAGATATTTGAA
ACTACTAAACACTGATGCAGGGAATTCTATGCAACTAAAATGCATAAAGT
AGGGCTGAAATTCCTCTGTGAAAAGTAAATTAGTTCTTGTACAATTCTGT
ACATGGATAAAAAGTTTTCTAATATTTCGACCACTCTACTCCTTTCTATC
TTCCTCACATCCCTGTGAATTCCCTCCTCAATAAAAATCTCATTTCCCAC
ATTAATATATTTTGTGCGTGAACTGCTAAGAAACCAGGGCATGGTTTAGA
CAACCCTGATCTTGACAAGATGAGGTATTAAATGTATGTTAATAGGTATA
AAACCTGTGTATTTGAAAGTGCTAATAGCACAAGAATTCTCTAAGATTCT
AAAAGAAAATAGGAATATACTTGCTCCATCAGTTTTGTGAGTTCTTTTTT
AAAATATTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCC
AAAAGTCCCCCATACCCTCCCCACCTCTTCCCTACCCACCCATTCCCATT
TTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATACAGTTTGCATGTC
CAATGGGCCTCTCCTTCCAGTGATGGCCGAATAGGCCATCTTTTGATACT
ATGCAGCTAGAGACAAGACC

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGTGCTCCAAGAAAACAGTGGAAGAGTC
TTGTGACTTCAGTTTCTTTAAAACATAGGATTATTATTGGAATGTGTTTT
CATGGTCCTCCCAGGTGTAGCAAATGGGAGAGAGTTTACTTGGGATTACT
CATTATTGCTTGCTGGTGTTATTTAATTAAATGTCTAAACCATCCTTTAC
ATGCCTCTTAAAAAACATAATATAGTTTTGCCATGTGTGGCTTGTCCTTG
CGGTTGTGTACAACTTGAACTCGTGAGATGCTCACTCTCGTGGCTTTTCT
TAACCCTCAGAGTATAAACTGTCTGATGCTCTGAATAAGAATGGTTATTC
CTAAGACTTTAGACCGGTGGATCTCAACCTTCCAAATGCTGTGACCTTTT
AGTGCAGTTCCTCATGCTATGCTGACCCCAAAACATAAAGTTATTTTTGG
TGATACTTCATTAGCTATAATTCCTCTGCTGTTATGAATCATAATGGAAT
TATCTGTGTTCTAATGGTCTTAGTTAATCCATGTAAAGGTGGTGGCAGCC
CACATGTTAAAAAACACTGCTTTAGACAGTCTTATTTATAGGCTTCATTC
TCATAGGTAGAACTGTCTTTATGTTGGTGATAGATAACCAATAAGAGATT
AATTCCCGTGGGGACACTAATTCGCTCTTTTTGAAAAACCTTTATTGGGC
TCCATTCTGGGTGTAGGTAGCGAAACCTGTGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_f05.b1 MSMg01no473_f05.b1 CHROMAT_FILE:
MSMg01no473_f05.b1 PHD_FILE: MSMg01no473_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:21 2005
         (634 letters)



>mm_chr12_98412528_98413561
          Length = 1034

 Score = 1174 bits (607), Expect = 0.0
 Identities = 625/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcttctttttctcctccaagactgaaatggtggggatagttggtatgatgat 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcttctttttttcctccaagactgaaatggtggggatagttggtatgatgat 263

                                                                       
Query: 64  actgttaaacaactcccaccacagctaataaaaaagatatttgaaactactaaacactga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgttaaacaactcccaccacagctaataaaaaagatatttgaaactactaaacactga 323

                                                                       
Query: 124 tgcagggaattctatgcaactaaaatgcataaagtagggctgaaattcctctgtgaaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcagggaattctatgcaactaaaatgcataaagtagggctgaaattcctctgtgaaaag 383

                                                                       
Query: 184 taaattagttcttgtacaattctgtacatggataaaaagttttctaatatttcgaccact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaattagttcttgtacaattctgtacatggataaaaagttttctaatatttcgaccact 443

                                                                       
Query: 244 ctactcctttctatcttcctcacatccctgtgaattccctcctcaataaaaatctcattt 303
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 444 ctactcctttctatcttcctcacatccctgtgaattccctcttcaataaaaatctccttt 503

                                                                       
Query: 304 cccacattaatatattttgtgcgtgaactgctaagaaaccagggcatggtttagacaacc 363
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 cccacattaatatattttgtgcgtgaactgctaagcaaccagggcatggtttagacaacc 563

                                                                       
Query: 364 ctgatcttgacaagatgaggtattaaatgtatgttaataggtataaaacctgtgtatttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgatcttgacaagatgaggtattaaatgtatgttaataggtataaaacctgtgtatttg 623

                                                                       
Query: 424 aaagtgctaatagcacaagaattctctaagattctaaaagaaaataggaatatacttgct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagtgctaatagcacaagaattctctaagattctaaaagaaaataggaatatacttgct 683

                                                                       
Query: 484 ccatcagttttgtgagttcttttttaaaatatttttattacatattttcctcaattacat 543
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 684 ccatcagttttgtgagttctttttttaaatacttttattacatattttcctcaattacat 743

                                                                       
Query: 544 ttccaatgctatcccaaaagtcccccataccctccccacctcttccctacccacccattc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttccaatgctatcccaaaagtcccccataccctccccacctcttccctacccacccattc 803

                                          
Query: 604 ccatttttttggccctggcattcccctgtac 634
           |||||||||||||||||||||||||||||||
Sbjct: 804 ccatttttttggccctggcattcccctgtac 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_f05.g1 MSMg01no473_f05.g1 CHROMAT_FILE:
MSMg01no473_f05.g1 PHD_FILE: MSMg01no473_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:21 2005
         (501 letters)



>mm_chr12_98585356_98586256
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 498/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagtgctccaagaaaacagtggaagagtcttgtgacttcagtttctttaaaacatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 652 tgagtgctccaagaaaacagtggaagagtcttgtgacttcagtttctttaaaacacagga 593

                                                                       
Query: 61  ttattattggaatgtgttttcatggtcctcccaggtgtagcaaatgggagagagtttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttattattggaatgtgttttcatggtcctcccaggtgtagcaaatgggagagagtttact 533

                                                                       
Query: 121 tgggattactcattattgcttgctggtgttatttaattaaatgtctaaaccatcctttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgggattactcattattgcttgctggtgttatttaattaaatgtctaaaccatcctttac 473

                                                                       
Query: 181 atgcctcttaaaaaacataatatagttttgccatgtgtggcttgtccttgcggttgtgta 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atgcctcttaaaaaacataatgtagttttgccatgtgtggcttgtccttgcggttgtgta 413

                                                                       
Query: 241 caacttgaactcgtgagatgctcactctcgtggcttttcttaaccctcagagtataaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 caacttgaactcgtgagatgctcactctcgtggcttttcttaaccctcagagtataaact 353

                                                                       
Query: 301 gtctgatgctctgaataagaatggttattcctaagactttagaccggtggatctcaacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtctgatgctctgaataagaatggttattcctaagactttagaccggtggatctcaacct 293

                                                                       
Query: 361 tccaaatgctgtgaccttttagtgcagttcctcatgctatgctgaccccaaaacataaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tccaaatgctgtgaccttttagtgcagttcctcatgctatgctgaccccaaaacataaag 233

                                                                       
Query: 421 ttatttttggtgatacttcattagctataattcctctgctgttatgaatcataatggaat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 232 ttatttttggtgatacttcattagctataattcctctgctgttatgaatcataatgtaat 173

                                
Query: 481 tatctgtgttctaatggtctt 501
           |||||||||||||||||||||
Sbjct: 172 tatctgtgttctaatggtctt 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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