CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACAATGCGCNGG
AATCATTTAAATTCCCTCAACAGAGTTGNTCTGCTGCCTTGTCTGTGATG
ACACCAAGGAAACAGAAGTCCACTTGATTGTTGTTTTCAAATTGTTGGCT
GCTGGGAATCACACTCACCCTGCTCTGAGGGAGCTGAGCTGAGCTGCAGC
AAATGGCATCTTGTCTTCCTTGCTCTACTCCTGTAAACTAAATTGTTTTC
ACGTGTTCAGCAATTGGTTTTTCCCTAAGAAAAATGACCTGAAAATCTAT
AATAAGACTTTGAAACCTATGGCTCATTACTTGAAACTATCAAGAATATC
ATGACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAG
AAGCAGGTTGGGGAGGAAAGGGTTTATTTAGCTTACACTTTCCACACTGC
TGTTCATCGCCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGC
AGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCCTGCTTCC
TCTGGCTTGCTCAGCCTGCTCTCTTATATACCAAGACTTCTAGCCCAGAG
ATGGTTCCACCCACAAGGGGCCCTTCCCCCTTGATCACTAAATGAGAAAA
TGCCTTACAGTTGTTTCTTCTGGAGGCATTTCCTCAACTGACGCTCCTTT
CTTGTGAAAACTCAGCTGTGTCAGGTTGAAACAAAACTAGCCAGTATCAT
TGACCCCTTGTCAACTTG

NNNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAAGGCC
TGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATAA
AAATCAAAACAACCCTGAGTTTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAACTCAGGTGACAGCAGATGTTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGCTGGTTCCTCAGATTTTTGGACATATTACTACTGGAGGATT
CAGCAATATCTTTCCTGGGCATATATCCAAAAGATGTTCCAACTGATAAG
GACACATGATCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTAGAAGGAGCTCGTGTCTCTAGCTACATAGGTAGCTGAAGATGGCCTAG
TTGGCCATAAGAGTGACCTCTTGGTCTTGCAAACTTTATATGCCTCAGTA
CAGGGGAACACCAGGGCCAAGAAGTGGAAGTGTGTGGGTAGGGGAGTGCT
TATATGTTTATGCTNCCTTCTTTTTCTTCTTCTTTTTTCCTCTTCTTTTT
TTCTTCTTTTTTTTCTTCTTTTTTTNNCTATTTTTCCTTCTTCTTTTTCT
TGTTCATCCCCATCTTGTTTTTACTTTTTTGTCTCCCTCT

Query= MSMg01no473_f12.b1 MSMg01no473_f12.b1 CHROMAT_FILE:
MSMg01no473_f12.b1 PHD_FILE: MSMg01no473_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:23 2005
         (543 letters)



>mm_chr12_10491509_10492451
          Length = 943

 Score =  872 bits (451), Expect = 0.0
 Identities = 516/547 (94%), Gaps = 24/547 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctgccttgtctgtgatgacaccaaggaaacagaagtccacttgattgttgttttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctgctgccttgtctgtgatgacaccaaggaaacagaagtccacttgattgtcgttttca 260

                                                                       
Query: 61  aattgttggctgctgggaatcacactcaccctgctctgagggagctgagctgagctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgttggctgctgggaatcacactcaccctgctctgagggagctgagctgagctgcag 320

                                                                       
Query: 121 caaatggcatcttgtcttccttgctctactcctgtaaactaaattgttttcacgtgttca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 caactggcatcttgtcttccttgctctactcctgtaaactaaattgttttcacatgttca 380

                                                                       
Query: 181 gcaattggtttttccctaagaaaaatgacctgaaaatctataataagactttgaaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaattggtttttccctaagaaaaatgacctgaaaatctataataagactttgaaaccta 440

                                                                       
Query: 241 tggctcatta---cttgaaactatcaagaatatcatgactgtcttagtcagggtttctat 297
           ||| |  |||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgg-t--ttaaaacttgaaactatcaagaatatcatgactgtcttagtcagggtttctat 497

                                                                       
Query: 298 tcctgcacaaacatcatgaccaagaagcaggttggggaggaaagggtttatttag-ctta 356
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||
Sbjct: 498 tcctgcacaaacatcatgaccaagaagcag-ttggggacgaaagggtttattt-gactta 555

                                                                       
Query: 357 cactttccacactgctgttcatcgccaaaggaagtcaggactggaactcaagcaggtcag 416
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cactt-ccacactactgttcatcgccaaaggaagtcaggactggaactcaagcaggtcag 614

                                                                       
Query: 417 gaagcaggagctgatgcagaggccatggagggatgttctttactggcctgcttcctctgg 476
           |||||||||||||||||||||||||||||||||||||||||||||||    ||      |
Sbjct: 615 gaagcaggagctgatgcagaggccatggagggatgttctttactggc----tt------g 664

                                                                       
Query: 477 cttgctcagcctgctctcttatataccaagacttctagcccagagatggttccacccaca 536
           ||||    ||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 665 cttg----gcctgctctcttatataccaagacttccagcctagagatggttccacccaca 720

                  
Query: 537 aggggcc 543
           |||||||
Sbjct: 721 aggggcc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)