BAC Information

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BAC

Clone NameMSMg01-473H13
Chromosome12 (Build37)
Map Location 8,380,183 - 8,380,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473H13.T7 (MSMg01no473_h13.b1)MSMg01-473H13.TJ (MSMg01no473_h13.g1)
ACCAG555763AG555764
length806751
length of high quality
(start - end)
237 (82 - 318)593 (76 - 668)
definitionCHROMAT_FILE: MSMg01no473_h13.b1 PHD_FILE: MSMg01no473_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:34 2005CHROMAT_FILE: MSMg01no473_h13.g1 PHD_FILE: MSMg01no473_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTAAAATTGCGGCCGCTAAANGAATCACTACTTCGGACCCAGCGCGGN
AANCNCCCATCTTACCACAACCACGTGCAGGGATTAAAGATGTCAGCTAC
CACACACATCCAGCTTCTATCCAGCTTCCAGTGCTGAGGGTCTACGCTCA
GCACTTCATGCTTGCTTGACAAACTTCTGGTCTCCAAGAAAGTCACAGGA
CAACCCATGGACAGTCTGGTTTCTCTCCATGGAGAGACCAGATGCATCAA
CTGCATATCATACCTGGGGTGGTTTGAATAGGAATGCCCCCCCATAGGCT
TGTATATTTGAATGGTTGGTCTTTTTTTTTGACACGCTTCCCACCATGTG
AGTACACTGTTGCTGTCTTCAGACATGCCAGAAGAGGCATCAGGTCTCAT
TATAGATGGTTGTGAGCCACCTTGTTCTTTCTGCTAATTGAACTTCAGAC
CTCCGAAACAGCAGTCAGTGCTTTTTATTTCGCTGAGTCATCTCTCTCGT
CCTATGCTTTCCTCCATTGATGTTTGTTGTAATACACCCTCTTAAATCAA
CAATATTCCTTCCACCTTTGGCTCATTGCTTTCCTTCTTAACTATTGTCC
CCTGTATCCTTTCACTTACTCTACTCGCCAACTATTATTCTTCTCACTTC
GATTCTTTTTTTTTCTTCTTCTTTCATTCTAGTTTATTTTTTTTATTTTT
TTCAGTTAATCCATTCTTGTCCTCCTCCCCTCCTCTGCTACTTTCCCCTT
TCTTTCCCTCACCTAGCTCTATTCTTCACATCTCTTCTACTTCCTTCCTG
CTTCAT
ACGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCAATCCTACACTCACTGAGGATTGC
TGGTTATGTTTGGGCTTAAGGGTGATGTGGCCTTTGGCCTTTCCATTGCT
CAACACCTCTGATCCACCTTCCCCCACCTTACATAATTGCAGTTTTACAA
AACCTTTAAAGGTTCAGCCTACTGAGTTTAATACCTCTCTTTGTTTTTGG
AGCCGTACGCAAAATAATTCCTTTGATGTTGATCTTGGTATTGCCTCCTT
TACCTATTGCTCTACTATATTTTATTCCTCCCAGGCTGGTTGTCTCCTTC
ACCCGCCCCCCGCAAAGTTTTCGTTTGTGGAGATAATATGGCTTATCCCT
TCCTGCCCATAAATTGGATGGGACTCTGCGCCCCTGCCCTGCTCATCCCC
GATATTGATATTCTCCCTGGTGATGAACCCGTTCCCCTTCCTAGCTTTGA
TACTTTTGTCCCTCGACATAAAAGGGCACTCCAATTCATTTCCCTACTGG
TGGGGCTCTGCATAACTAGCGCTCTTGCATCCAGAACTGCAGGGTTAGGG
GTAGCCATAGACTCATACAAGAAGCGTTCCTTACAGTTGATCTCTGATGT
TAATATGATATATGAGTCTATAAAAGATATTCAGGGCCGGGTGTGGTGGT
GCACACCCTTTATCCCAGCACTTGGGAGGCAGAAGCAGGTGGATTTCTGA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_h13.b1 MSMg01no473_h13.b1 CHROMAT_FILE:
MSMg01no473_h13.b1 PHD_FILE: MSMg01no473_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:34 2005
         (237 letters)



>mm_chr12_8379933_8380569
          Length = 637

 Score =  340 bits (176), Expect = 3e-98
 Identities = 186/192 (96%), Gaps = 5/192 (2%)
 Strand = Plus / Plus

                                                                       
Query: 51  tgctgagggtctacgctcagcacttcatgcttgcttgacaaacttctggtctccaagaaa 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgctgagggtctacgctcagcacttcatgcttgcttgacaaacttctggtctccaagaaa 310

                                                                       
Query: 111 gtcacaggacaacccatggacagtctggtttctctccatggagagaccagatgcatcaac 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtcacaggacaacccatggacagtctggtttctctccatggagagaccagatgcatcaac 370

                                                                       
Query: 171 tgcatatcatacctggggtggtttgaataggaatgccccccc-----ataggcttgtata 225
           |||||| |||||||||||||||||||||||||||||||||||     |||||||||||||
Sbjct: 371 tgcatagcatacctggggtggtttgaataggaatgccccccccccccataggcttgtata 430

                       
Query: 226 tttgaatggttg 237
           ||||||||||||
Sbjct: 431 tttgaatggttg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)