BAC Information

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BAC

Clone NameMSMg01-473J15
Chromosome12 (Build37)
Map Location 114,145,745 - 114,334,355
singlet/doubletdoublet
Overlap geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Downstream geneMta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473J15.T7 (MSMg01no473_j15.b1)MSMg01-473J15.TJ (MSMg01no473_j15.g1)
ACCAG555862AG555863
length758767
length of high quality
(start - end)		251 (73 - 323)328 (334 - 661)
definitionCHROMAT_FILE: MSMg01no473_j15.b1 PHD_FILE: MSMg01no473_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:44 2005CHROMAT_FILE: MSMg01no473_j15.g1 PHD_FILE: MSMg01no473_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,145,745 - 114,145,995)(114,334,028 - 114,334,355)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGAGAATCCGCGG
AATTCATTTTTGCTTACCACTGTCCCATTTCATAAAGCCCTCTCTTTAGT
TAGGAGGCCAGGTACACACATTCCCCAAACCTTACTCCCCAGGAGGGTTC
CACTAAACGGGTGTCAACTACTACAGTAGGACTCCAGCAGTGCCTGAGGC
CCAAGTCACCCACTGCGCTGAGGTCAACAGAACCACCTGACCTCTTAAGA
CCCCACATCAACATGACCCAACCCTCAGGCCATGTCCCACTTCCACCTAT
GTCCCAACTGCACATGGAGAAAATTTTTTTAACCCAAAGAACAGGGAGGC
CAAAACGTTTAAGTTATTAAATCAAATATACAGAGTGATTCATTTAATAT
GTACATATTTACAGAAATGCACTTTCACAAGGAGGGTGGCCGGGGCCGGC
AGGTGGGCAGCGGCCTGGTGCCCACGGCAAACGCTGACAGCTGGGAGGGG
GTCTGTGTGAAGGCACTTGTCACAAGCTTCAATACTGCCGCCGTCCCGGG
AGGGAAACCGAGCAGTTGGGAAGGGCACTTCTGAAAGCACAGTTGGAGAT
CTCTGGAGAGTTCTGGGCATGAGGAAGCAAGGACAGCAGGCTGGATGGTT
TAGCCAAGGCATGTTTCTTTTTTACGTGCCAGTCTTAGGTCACACCAGTG
ACCTCCCACCCCACTGTACACCACAGTGTCTACAACTGTTTTGTAACTGT
TTCACACT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCAAGCCAATGCTCTCCAGAA
CGGAACACGCTCCCTCAGAATAGAGTGCCGTGTGCCTCAGAAGGCAGCTC
AACTCACTGCCTCCCCCTGTACAGGCTAGAGAAGGTAGACTGCCCACCCA
GCTCAGGTCTTGTCCAGGAACAAGGCGCATTCAAGATCTCAGAGCCAAAG
GGAAGAAGAGAAATGAATGCACTCCTCGGTGGCAGAGCCGCCCGACGGGA
GAGCTGCCTGTGCAGCAAAGAATGCTGTTGTATGAAGTGGCACGGTGACC
ACACAGAGTAACTCGATAGGAATACCTCTCACAAGGGAGGCGCAGGGCAG
GTAAAATCCAGCAGAGAAGAAAACACAATAGAAGACTCCATCGCAGGAGT
GTTTGCCTCCCGGATCCGAGCCATGTGGGGACAGGGAGAGCTCAGACGCT
CAGTGACAAAGCAAACCGAGAGGAAGACCGGGCCCAAGGGAACACCTTAT
GGGTCACAGCACACCTCAGATGCAAATTGTTGAACTAAAAAGGGGAGAAA
GGCTTCGTGTCATTTGAGGAAGACACAATTGTCAATGAAACCCATTCAAC
TTATTTTCTGAGTACCTCTGTCTCAAGGCAATGTGCCGATAAAAAACAGA
CCACAATGGGAAAGCACTGCTATCTCACGGGAGGGCATGGAAAGTAGTAT
AGTCAGGTCCCAGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_j15.b1 MSMg01no473_j15.b1 CHROMAT_FILE:
MSMg01no473_j15.b1 PHD_FILE: MSMg01no473_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:44 2005
         (251 letters)



>mm_chr12_114145545_114146195
          Length = 651

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccatttcataaagccctctctttagttaggaggccaggtacacacattccccaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccatttcataaagccctctctttagttaggaggccaggtacacacattccccaaacct 260

                                                                       
Query: 61  tactccccaggagggttccactaaacgggtgtcaactactacagtaggactccagcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactccccaggagggttccactaaacgggtgtcaactactacagtaggactccagcagtg 320

                                                                       
Query: 121 cctgaggcccaagtcacccactgcgctgaggtcaacagaaccacctgacctcttaagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgaggcccaagtcacccactgcgctgaggtcaacagaaccacctgacctcttaagacc 380

                                                                       
Query: 181 ccacatcaacatgacccaaccctcaggccatgtcccacttccacctatgtcccaactgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacatcaacatgacccaaccctcaggccatgtcccacttccacctatgtcccaactgca 440

                      
Query: 241 catggagaaaa 251
           |||||||||||
Sbjct: 441 catggagaaaa 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no473_j15.g1 MSMg01no473_j15.g1 CHROMAT_FILE:
MSMg01no473_j15.g1 PHD_FILE: MSMg01no473_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:44 2005
         (328 letters)



>mm_chr12_114333828_114334555
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagtggcacggtgaccacacagagtaactcgataggaatacctctcacaagggaggcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaagtggcacggtgaccacacagagtaactcgataggaatacctctcacaagggaggcgc 469

                                                                       
Query: 61  agggcaggtaaaatccagcagagaagaaaacacaatagaagactccatcgcaggagtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agggcaggtaaaatccagcagagaagaaaacacaatagaagactccatcgcaggagtgtt 409

                                                                       
Query: 121 tgcctcccggatccgagccatgtggggacagggagagctcagacgctcagtgacaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgcctcccggatccgagccatgtggggacagggagagctcagacgctcagtgacaaagca 349

                                                                       
Query: 181 aaccgagaggaagaccgggcccaagggaacaccttatgggtcacagcacacctcagatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 348 aaccgagaggaagaccgggcccaagggaacaccttatgggtcacagcacacctcagaggc 289

                                                                       
Query: 241 aaattgttgaactaaaaaggggagaaaggcttcgtgtcatttgaggaagacacaattgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 aaattgttgaactaaaaaggggagaaaggcttcgtgtcatttgaggaagacacaactgtc 229

                                       
Query: 301 aatgaaacccattcaacttattttctga 328
           ||||||||||||||||||||||||||||
Sbjct: 228 aatgaaacccattcaacttattttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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