BAC Information

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BAC

Clone NameMSMg01-473L18
Chromosome12 (Build37)
Map Location 40,487,950 - 40,488,327
singlet/doubletsinglet
Overlap genenone
Upstream geneEtv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473L18.T7 (MSMg01no473_l18.b1)MSMg01-473L18.TJ (MSMg01no473_l18.g1)
ACCAG555963AG555964
length763774
length of high quality
(start - end)
248 (77 - 324)465 (78 - 542)
definitionCHROMAT_FILE: MSMg01no473_l18.b1 PHD_FILE: MSMg01no473_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:56 2005CHROMAT_FILE: MSMg01no473_l18.g1 PHD_FILE: MSMg01no473_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACGCGC
GGAATTCTCACCTGATGCCACAAAATAGCTGAAAAGCACCTGAAAAAATG
TTGAACATCCTTATTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TTTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGGACACTCTCCATTGTTGGTGG
AATTGCATGCTTGTACAACCACTCTGGAAATAAGTCTGGAGGTTCCTCAC
AAAAATTGGACATAGTACTACTGTTGGTTCTTTCAATACCACTCCTGGGC
ATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAATAACCCAGAT
GTCCCTCAACAGAGGAATGGATACAGAAAATGTGTACTTTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGTAAA
TAGATGGACCTGGAGCTCATCATCCTGAGTGAGGTAACCCTATCACAAAA
GAATTCATACCATATGTACTCACTGATAAGTGGATTATTATCCCACATAC
TTATAATAATCATTATTTTTTTATTTCATTTGCCTAACGGCATGACATTC
ATTAAGAACCTTGTATCTCAGTTGTGGACCCCTTTTGTCTCCTTCTTAAA
ATTTGTGATTCTA
NCCGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCATATCATCTTCCTGACCT
TTTAAGGCCAGGGAAGAAATTCTGAAGGGGTGTTTTCATTGAGAACATGT
GTTTATGTTCCTCAGCTAAAAATCAAGCTATGGAATGTGAAGGATGCAGA
ACTTCTAGAATGGCAAGAGGCAGGTGTTAGATCTCTTCTCAAGACAACAG
CCTGTGAAAGTCACTGAAAATAGTCCTTATGGCCACAGAGGGAATAAGAC
CCACCCATTCAGATAAACCCTCTAGTTCTCAGTGATAACAGCAAGACCTC
ATGGCTTTTGACTCAGAGCTGTTCCTTTAACCTCTACTCTGACCATACAT
CACAGATGCTCTGTCCCAGGTGCAGCTGTCACCAAGAGAAGGGCTTTCTT
TTCCTCCCCTTTAATGACGCACAGCAGACTGTCCAAGCAGCACCTGCTCC
TAAACTCTGAGGAAGTGATATGAAGGTTCTGCTCAGCAGGAAAATGGGAC
AGGAGGGGAAAGAAGCCTTTGGCTCTGCCTGGGGAACTGGTTTTATTTGG
AGCAGAACATGGAAAATTTTTTACTTAATGAAAAAAAAAACCACCATAAA
TCCTACAACCCTATAATTGTGGCTATCTTTGTTCAAGAAATAGTCCATAA
ACTTTTACCGGGTTGTTTCATTCTTGTTCTATTCCCTATTATTTTATGTT
ATCGAAATTTTTCACGGAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_l18.g1 MSMg01no473_l18.g1 CHROMAT_FILE:
MSMg01no473_l18.g1 PHD_FILE: MSMg01no473_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:56 2005
         (465 letters)



>mm_chr12_40487750_40488614
          Length = 865

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccatatcatcttcctgaccttttaaggccagggaagaaattctgaaggggtgttttc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctcctatatcatcttcctgaccttttaaggccagggaagaaattctgaaggggtgttttc 519

                                                                       
Query: 61  attgagaacatgtgtttatgttcctcagctaaaaatcaagctatggaatgtgaaggatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 attgagaacatgtgtttatgttcctcagctaaaaatcaagctatggaatgtgaaggatgc 459

                                                                       
Query: 121 agaacttctagaatggcaagaggcaggtgttagatctcttctcaagacaacagcctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaacttctagaatggcaagaggcaggtgttagatctcttctcaagacaacagcctgtga 399

                                                                       
Query: 181 aagtcactgaaaatagtccttatggccacagagggaataagacccacccattcagataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagtcactgaaaatagtccttatggccacagagggaataagacccacccattcagataaa 339

                                                                       
Query: 241 ccctctagttctcagtgataacagcaagacctcatggcttttgactcagagctgttcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccctctagttctcagtgataacagcaagacctcatggcttttgactcagagctgttcctt 279

                                                                       
Query: 301 taacctctactctgaccatacatcacagatgctctgtcccaggtgcagctgtcaccaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taacctctactctgaccatacatcacagatgctctgtcccaggtgcagctgtcaccaaga 219

                             
Query: 361 gaagggctttcttttcct 378
           ||||||||||||||||||
Sbjct: 218 gaagggctttcttttcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)