Query= MSMg01no473_o09.b1 MSMg01no473_o09.b1 CHROMAT_FILE:
MSMg01no473_o09.b1 PHD_FILE: MSMg01no473_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:09 2005
(248 letters)
>mm_chr12_107982260_107982907
Length = 648
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%)
Strand = Plus / Plus
Query: 1 cgctgattccttcatctgggacacagagcatgtgaggcctccctcatgagctgccccaga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cgctgattccttcatctgggacacagagcatgtgaggcctccctcaggagctgccccaga 260
Query: 61 gactaatgacatggtgtgtgggaaatgcctggtgaccagaaggcatctcatgccatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactaatgacatggtgtgtgggaaatgcctggtgaccagaaggcatctcatgccatatgg 320
Query: 121 cacccattcctccttgtggtaggtcagcctcatttactgtttcctggtgcctggaagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacccattcctccttgtggtaggtcagcctcatttactgtttcctggtgcctggaagcca 380
Query: 181 aaggtaggccatgctttcccacgtagatcagatgaccacttgagataattataaggttcc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggaggccatgctttcccacgtagatcagatgaccacttgagataattataaggttcc 440
Query: 241 tgttttg 247
|||||||
Sbjct: 441 tgttttg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_o09.g1 MSMg01no473_o09.g1 CHROMAT_FILE:
MSMg01no473_o09.g1 PHD_FILE: MSMg01no473_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:10 2005
(504 letters)
>mm_chr12_108102465_108103368
Length = 904
Score = 826 bits (427), Expect = 0.0
Identities = 476/505 (94%), Gaps = 23/505 (4%)
Strand = Plus / Minus
Query: 1 aagaaaagccccacagcagcctctgtagaaaccaagatcaaatcacttctgaggaattcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aagaaaagccccacagcagcctctgtagaaaccaagatcaaatcacttctgaggaattcg 690
Query: 61 ggtgtctctgtggtgcctcttgctcgaggcttgaatctctgtctggagacttaacttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggtgtctctgtggtgcctcttgctcgaggcttgaatctctgtctggagacttaacttccc 630
Query: 121 cccaacccccaaccttcctccctgatcacctttcttgctgttttgcttccgtctcgagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 629 cccaacccccaaccttcctccctgatcacctttcttgctgttttgcttctgtctcgagca 570
Query: 181 ccctctctaaccattccttggtagtgagtaaggtgccactttgctctgatacttgttgac 240
|||||||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 569 ccctctct--cga-------gtagtgagtaaggtgccgctttgctctgatacttgttgac 519
Query: 241 acttgaccatctagttgagttcaagttcatgagcccttggcaccagcactgcctaaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acttgaccatctagttgagttcaagttcatgagcccttggcaccagcactgcctaaccca 459
Query: 301 gccttcttgccatggtcattctgcacagaatggaggtacctagaaaagatacttgttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gccttcttgccatggtcattctgcacagaatggaggtacctagaaaagatacttgttctt 399
Query: 361 taaaattaaaaaaaaaaa----tccttagccataactcctccctgtttcagatcccagga 416
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 398 taaaattaaaaaaaaaaaaaaatccttagccataacgcctccctgtttcagatcccagga 339
Query: 417 gatcctcagagatgtgtacaagtggtgatatgactttgtcacatctacccatggacgaga 476
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gat----------gtgtacaagtggtgatatgactttgtcacatctacccatggacgaga 289
Query: 477 tgacacctctttacattgaaaggat 501
||||||||| |||||||||||||||
Sbjct: 288 tgacacctcgttacattgaaaggat 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
