TTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACCATC
CGCGGAATTCTCCTTTTACCTATAAAATAATTTTGCCTTATTTTAAAATA
AAATATCAAAGATAGAATAAGTACTTCTAGGCTAAAATTGTTAAGAATTG
TACATGTGGGAGTGGAGAGACAGCTTAGTGGCTAAGAGCTCTGACTGCTT
TTCCAGAGGATTCAGGTTTAATTCCTAGGAGATCTTACATCCTCTTCTGG
TATCTTTGGGCAAACATCCATACACATAAAAATAAATGCATAAAATTTAA
AAAGAAAAACCTTATAAAAGTGAANCGTAATTGTAAGAGTATTCACAAAT
ATATATGTGTATGTATGTATGTGTATATATATATATATATATTTTTNNCC
CNCNNCCCCTNNNCCTTCCCCCCCCCTTTTTTTTTTTTTCTTTTCTTCTC
TTCCTCTTCTTCTCCCCTCCTTTTTTTTTCCCCTTTCTTTCTTCCCTCTC
TTTTCCCTCCCTTCTTTCTCCTTTTTCTTCCTTCTCTCCCCTTTCCTTTT
TTTCCCCTTTTTCCTTTCCCCTCTTTTCTTTTCCCTCTTCTCTCCTCTTC
TCTTTTCCTTTTTTCCTTTTCTCTCCTTTTTCTCCTCTCTTTTCCCCTCC
CCTTCTCTTCCTTTTCTCCTTTCTTTTTTTTTTTTTTTCTCTACTCCCTT
TCTCTTCCCTTCCTTTTTTCCTCTCTCTCCCTTTCTTTTCTCCTCTCCTT
TCCCTCCCTCCCTTATCTTCTCCN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATGTTCGTAGACTAAAGGAAG
AAGAACAACGGTGATGTCACAAGATACAGAAAGCTTGCCATATTCATCAT
GGGCACTCGAGATTCTACGCTGCAAACCAACAAACAAGAGCTCTGAGCAC
AAGAAAAGCTGAGAATGGACACTCACACATGGAATGCCAGCATGTGGGAA
GCAGAGGCAAGAGGCTCAATCACTGAGACTTCAAGGCCACCCTGAGCCGC
ACAGCAAATTTCAAGTCAGTAGGAGCTACAGGGTGAGACTTTGTTTCAAA
GAAAAATAACAATAGAGGAGGATTTTCTAAATAAGAAAAAAGAATATCTT
CACAGTTCCTTCATTTAAAAAATCACTCTGAATAGTGAAGCGCCAAAACA
TGAGGAACAAACCAAAGGTGCTTCTAACCTTCCTCCTGTACACAACTGCA
CAAGGAAATGCTAAGCTATAAAACAAGATAGAGAAAAACTACACGTCCGA
AGGAAGTANATGCCATTATTCAGATGCCATGATTGTGTGCATGCTAAATC
CTAAAGTATCTATAGGATGTGTTAATCCAAACAGCCCAAAATTACCTAAA
GACTATTAAAATTGTACACTTGTAAATTGTTCAAAATTGATGGATACCAG
GCTAATAGGGAAGAGTCAAACTGCTTTTTCTACAACCACAACTTAAAGAA
TTGAAACCTTATAAAGGATGTGTGC

Query= MSMg01no473_o13.g1 MSMg01no473_o13.g1 CHROMAT_FILE:
MSMg01no473_o13.g1 PHD_FILE: MSMg01no473_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:10 2005
         (541 letters)



>mm_chr12_52615796_52616736
          Length = 941

 Score = 1002 bits (518), Expect = 0.0
 Identities = 535/541 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatgttcgtagactaaaggaagaagaacaacggtgatgtcacaagatacagaaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatgttcgtagactaaaggaagaagaacaacggtgatgtcacaagatacagaaagctt 260

                                                                       
Query: 61  gccatattcatcatgggcactcgagattctacgctgcaaaccaacaaacaagagctctga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gccatattcatcatgggcactcgagattctaccctgcaaaccaacaaacaagagctctga 320

                                                                       
Query: 121 gcacaagaaaagctgagaatggacactcacacatggaatgccagcatgtgggaagcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacaagaaaagctgagaatggacactcacacatggaatgccagcatgtgggaagcagag 380

                                                                       
Query: 181 gcaagaggctcaatcactgagacttcaaggccaccctgagccgcacagcaaatttcaagt 240
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 381 gcaagaggctcaatcactgagacttcaaggccaccctgagccacacagcaaattccaagt 440

                                                                       
Query: 241 cagtaggagctacagggtgagactttgtttcaaagaaaaataacaatagaggaggatttt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtacgagctacagggtgagactttgtttcaaagaaaaataacaatagaggaggatttt 500

                                                                       
Query: 301 ctaaataagaaaaaagaatatcttcacagttccttcatttaaaaaatcactctgaatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaataagaaaaaagaatatcttcacagttccttcatttaaaaaatcactctgaatagt 560

                                                                       
Query: 361 gaagcgccaaaacatgaggaacaaaccaaaggtgcttctaaccttcctcctgtacacaac 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gaagcgccaaaacatgaggaacaaaccaaagatgcttctaaccttcctcctgtacacaac 620

                                                                       
Query: 421 tgcacaaggaaatgctaagctataaaacaagatagagaaaaactacacgtccgaaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcacaaggaaatgctaagctataaaacaagatagagaaaaactacacgtccgaaggaag 680

                                                                       
Query: 481 tanatgccattattcagatgccatgattgtgtgcatgctaaatcctaaagtatctatagg 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgccattattcagatgccatgattgtgtgcatgctaaatcctaaagtatctatagg 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)