BAC Information

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BAC

Clone NameMSMg01-474B14
Chromosome12 (Build37)
Map Location 89,099,799 - 89,100,292
singlet/doubletsinglet
Overlap geneLOC100038982
Upstream geneEG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992
Downstream geneLOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474B14.T7 (MSMg01no474_b14.b1)MSMg01-474B14.TJ (MSMg01no474_b14.g1)
ACCAG556241AG556242
length1,468739
length of high quality
(start - end)
---496 (75 - 570)
definitionCHROMAT_FILE: MSMg01no474_b14.b1 PHD_FILE: MSMg01no474_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:26 2005CHROMAT_FILE: MSMg01no474_b14.g1 PHD_FILE: MSMg01no474_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTACTCGCACAATCGGTCGGAAGCGCGACTTGACTGCGCCGACACACGCG
GGGCTCTCATACTCACAGCGGAGAAGAAAGACGGGGGCAGACAGCGTGGA
CATGCCATCACCGGCCGATGTCTGTGAGCGATGAGATCATATCATTATCT
GCTCGAACGGATGTTACACACGATGTCGCCTCTACTGGTCTACGCAGGGA
GTCATTGTGAAAACCTTACATTACTATACTTTTCGCCGCTATCGTTTATA
CTCCTACCATAGACATAGTGATGACTCCTCGTTCGTGAGCTCACGGCAAT
ATCTGACTCAGGACGCGTACGCACACGCTCTCCTAGTTGCTGGATGCCAG
AGTAATGAGTCGTTGTAGTGCGAGGTGAGCGGTTGCGGGTTAGCTTGTAT
AACATAGATAAGACCATCCAACCGACGCAACCGACCAACCGCTGCGAGAC
CTCTCCTACTGCCCTCGGTCTCCCGCCGAGGGAAATGGGTGGAAGTGCGA
CACAGGGCACAGCCACACAACGCGAAAACAAACGATGATATGTCGTATAC
AGGAGGGCTAGAAGCATAACGATACGGAAGACGTGCCACTCGTCGCCGTC
TTTTGTCAAGGTGCGTAAGGGCGTTGGCGCGACTAGCTAGATTATATCTT
CACCATCTAATCACTTCTCATGTTCAGCCTCTACACGGATGCGGTACGTC
TCACATGAGAGCCGTGCNCGGGAATAATCAGGACGAGAATCATATCCTGT
ACTCAAGAGTTATGCGCGAGCGCGACTATCTACCGCTCCAGTGCGTAAGA
GCAGGACTTGCATACCATACATACTATGTACAACATGACCAGCTCTATCG
TAGTCGGANTGTAGATATAGCGATGTGTGACGACTGAATATGAATCCTAT
ATATGAATATGAGCGCTGGCTGTTGACTGGTCACATACCGATATCACTCT
GCTCTACACATCATATCTGTGTGCACTGTTCCGCGCCCACTCCCGTAACG
GTTGTCGATCGATGGCGTGTGACGCGNTACAGGCGGAGGCTAGCGACGCG
CAGGGATGCGNCGCGCGCGCTGTGTCGCGCCTAGTAGCACTACTACGGTT
GATGTCTTGTTCGCGCCGGCAAGTNTAGCGTATAGCGTGATGCTGCTCTC
GTGTATGCTGCTCGGCGTATGCACTGAGATGCGTATGTGCGCAGCACAAT
CCATGTGCTCACTCTCGTCTAGAAGATGGCGATCGTCGAGACGAGAGTAT
AGTAGATGTGCTGTGCTGCTAGACTCGATGTACACGCGGTAGCGTATACT
ATCATCGCGTTATAGCCAGTCAACGNGNTCATNATAGCGCGGTGAGCGAT
GATGTGATCCGNTAGTATCGCATACTCGCCGTGCGTATGTCAGACGTCTA
CTGGCGTGTNGATAACCTACTAGTGCGCCGCGTCACTATATATACGACCA
AGCTAAACACACGCCATN
ACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTGTCCCCAAACATGGCCTCTCAA
GATACTGGGTGTTCCCATGTTAGAGCAAAACCAAAAAGAAGAAAACTGGT
ACTCCAGCCAGCCTCTGCCACAAGGGCAGGGTCCGAAGGAAAGAAAAAAG
AAAGAAAGAGGAAGACCCAGCCAGGCCCAGAGGGAAGGAAAAGGTTTGTG
CAGACTAGAAACTGCCTGCTAGTAGCCCCAGGGGCAAGGCCCAGGGGCCT
AAAGGAACCAAGAAAAAGTCTTCTTCTGTGACCACAGTGGCCAGCCCAGG
GAAAGGGGGGATGGGCTGCACTTCCAACACAGGGCCCCAAGACTCTAGGC
ATGGTCCTGGTGCACCACTGACCTGGAAAGTTGGCAGTACAAGGAAGATG
CCTTCGGGCAAGTTGGTGGAACAGAAGGCCCGCTCCCTGAATGAAGGAGC
CCCCCAGGACACTCCTAAGCTCANAAAACGGAACCTGAGACACACAGAGC
TATTTGGGGCTGAAAGCAAGGAGGAGGACTCAGGACTGGGAGCGGGAGCA
CCCCATGTCTGGTCCCCGACCCTGCCCCACATGAGCTCAGACTCCGAATT
CTATTTTTTTTTCCTGCCTGGTGGATGGAAACAAAGGAAATTTTCCAATT
GGCCTCTAGGTCTTGTCCACTTGGGCCTCCCTGGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_b14.g1 MSMg01no474_b14.g1 CHROMAT_FILE:
MSMg01no474_b14.g1 PHD_FILE: MSMg01no474_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:26 2005
         (496 letters)



>mm_chr12_89099599_89100492
          Length = 894

 Score =  891 bits (461), Expect = 0.0
 Identities = 487/496 (98%), Gaps = 2/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtccccaaacatggcctctcaagatactgggtgttcccatgttagagcaaaaccaa 60
           |||||||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||
Sbjct: 201 cagtgtccccaaacatggcctctcaagatact-ggtgttcccatg-gagagtaaaaccaa 258

                                                                       
Query: 61  aaagaagaaaactggtactccagccagcctctgccacaagggcagggtccgaaggaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaagaagaaaactggtactccagccagcctctgccacaagggcagggtccgaaggaaaga 318

                                                                       
Query: 121 aaaaagaaagaaagaggaagacccagccaggcccagagggaaggaaaaggtttgtgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaaagaaagaaagaggaagacccagccaggcccagagggaaggaaaaggtttgtgcaga 378

                                                                       
Query: 181 ctagaaactgcctgctagtagccccaggggcaaggcccaggggcctaaaggaaccaagaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caagaaactgcctgctagtagccccaggggcaaggcccaggggcctaaaggaaccaagaa 438

                                                                       
Query: 241 aaagtcttcttctgtgaccacagtggccagcccagggaaaggggggatgggctgcacttc 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaagtcatcctctgtgaccacagtggccagcccagggaaaggggggatgggctgcacttc 498

                                                                       
Query: 301 caacacagggccccaagactctaggcatggtcctggtgcaccactgacctggaaagttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caacacagggccccaagactctaggcatggtcctggtgcaccactgacctggaaagttgg 558

                                                                       
Query: 361 cagtacaaggaagatgccttcgggcaagttggtggaacagaaggcccgctccctgaatga 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagtacaaggaagatgcctttgggcaagttggtggaacagaaggcccgctccctgaatga 618

                                                                       
Query: 421 aggagccccccaggacactcctaagctcanaaaacggaacctgagacacacagagctatt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 aggagccccccaggacactcctaagctcaaaaaacggaacctgagacacacagagctatt 678

                           
Query: 481 tggggctgaaagcaag 496
           ||||||||||||||||
Sbjct: 679 tggggctgaaagcaag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 894
Length adjustment: 10
Effective length of query: 486
Effective length of database: 884
Effective search space:   429624
Effective search space used:   429624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)