BAC Information

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BAC

Clone NameMSMg01-474I23
Chromosome12 (Build37)
Map Location 64,344,204 - 64,344,605
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474I23.T7 (MSMg01no474_i23.b1)MSMg01-474I23.TJ (MSMg01no474_i23.g1)
ACCAG556594AG556595
length704710
length of high quality
(start - end)
273 (372 - 644)576 (75 - 650)
definitionCHROMAT_FILE: MSMg01no474_i23.b1 PHD_FILE: MSMg01no474_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:04 2005CHROMAT_FILE: MSMg01no474_i23.g1 PHD_FILE: MSMg01no474_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGC
GGAATTCCTGATCTTTTCAGACAATTTATCATTAATGGGTGTTGGATTTT
GTCAAATGCTTTCTCAGCATGTAACACCATGATCATGTGTTTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTGCGTTGATGGATTTCTGTATATTAAA
CCATCCCTGCATCCCTGGAATTAAACCTACTTGGTCAGGATAGATGATTT
TTTTGATGTGTTCTTGGATTCAGTTAAAGAGAATTCTATTGAGTACTTTT
GCATCGATATTCATAAGGTTTANTTGNTTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGCATCAGAGTAATTGTGGCTTCATAGAATGAGT
TGGGTAGAGTACATTCTGCTTCTATTTTGTGGAATAGTTTGTGAAGAACT
GGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATA
TGGTCCTGGGCTTTGTTTGGTTGGGAGACTATTAATGACTGCTTCTATTT
ATTTAGGAGATATAGTACTGATTATATCACTAACCTCATGTTGATTTAAC
TTTGGTACCTGGTATCTGTCTAGAAACTTGTCCATTTCATCCAGTTTCTC
TTGTTTTGTTGAGTATAGCCTTTTGTANAAGGATCTGATGGTGTTTTGGA
TTTC
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCATTTAGTTGGTTATCACCAAAAGTT
TGTCTGATGCCCAGTCTTTATCAATAACATCAGCACATTGTATATTAGCT
TTCGTGTGAAAGTTTTCACATTAAGGGATAATGAGTATATTGAAATAGTA
TGAAAATAATTAGAATTTTGATACAGAATACACTTTAGGTATTCAAAGGA
AGTATATTATAGTGATGTATTCATCACAGACATGAGTTTAAGATAATAGA
AAATCATTTTTAACTGGCCTTCTATTATACTGGGTGTTCTGGATCCCAGA
AAACCTCAATCCTTTCTCAGAGTGAGCCTTTAAGTACACACATACACATA
AATCTACTGGGTTGACATATTTCAGTTAACTAGAGCAGTTAGCCAGAAGA
ACTACAGAATCCAAAAATCTAGGTTAGTGTTGCAAGAGACTTTCACAGAA
CTGTGAGCTTTTTGATAAATTAGGTCTTTGTTTTAGTTTTGACAGGTGGT
GGTGTGTAAATGCTGAGTTTTACAGCCTGAATTGTACTTCCATCATAGAG
TCAGTTTTGTTAAATTCTCAGGCCTACTAAGTTTTAGAGTCCTATTACAT
ATATGTGTACCATTTTAATCTAATTTAATAGTCACTGGAAAAAATCATTA
AGCAGAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_i23.g1 MSMg01no474_i23.g1 CHROMAT_FILE:
MSMg01no474_i23.g1 PHD_FILE: MSMg01no474_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:04 2005
         (576 letters)



>mm_chr12_64344204_64345179
          Length = 976

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttagttggttatcaccaaaagtttgtctgatgcccagtctttatcaataacatcagc 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 catttagttagttatcaccaaaagtttgtctgatgcccagtctttatcaacaacatcagc 343

                                                                       
Query: 61  acattgtatattagctttcgtgtgaaagttttcacattaagggataatgagtatattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acattgtatattagctttcgtgtgaaagttttcacattaagggataatgagtatattgaa 283

                                                                       
Query: 121 atagtatgaaaataattagaattttgatacagaatacactttaggtattcaaaggaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atagtatgaaaataattagaattttgatacagaatacactttaggtattcaaaggaagta 223

                                                                       
Query: 181 tattatagtgatgtattcatcacagacatgagtttaagataatagaaaatcatttttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tattatagtgatgtattcatcacagacatgagtttaagataatagaaaatcatttttaac 163

                                                                       
Query: 241 tggccttctattatactgggtgttctggatcccagaaaacctcaatcctttctcagagtg 300
           ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tggccatcaagtatactgggtgttctggatcccagaaaacctcaatcctttctcagagtg 103

                                                                       
Query: 301 agcctttaagtacacacatacacataaatctactgggttgacatatttcagttaactaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 agcctttaagtacacacatacacataaatctactgggttgacatatttcagttaactaga 43

                                                     
Query: 361 gcagttagccagaagaactacagaatccaaaaatctaggtta 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gcagttagccagaagaactacagaatccaaaaatctaggtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)