BAC Information

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BAC

Clone NameMSMg01-474O09
Chromosome12 (Build37)
Map Location 29,284,496 - 29,284,734
singlet/doubletsinglet
Overlap geneColec11
Upstream geneLOC100043009, LOC669327, 1110015M06Rik, Allc
Downstream geneRps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474O09.T7 (MSMg01no474_o09.b1)MSMg01-474O09.TJ (MSMg01no474_o09.g1)
ACCAG556851AG556852
length748718
length of high quality
(start - end)
389 (74 - 462)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no474_o09.b1 PHD_FILE: MSMg01no474_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:30 2005CHROMAT_FILE: MSMg01no474_o09.g1 PHD_FILE: MSMg01no474_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGCATACCAGCTCTGAAGGCAGAAGTTTCTGAGGGTCCACTG
CATGGGAACTGTGAAAGAAGACTTGGCTGCATTGTATGCCCCAAGAAGTT
GGAAATGCCAGAGCCATGAGATATTTGCCAAGGAGAGTTGAATACTGAGA
GTGGAATCAGCCCAAGAGAGACCAATGTTGCAAGCAGGAAAACTAGAATG
TCAGAATTACCCAAGGCCTTTGACACCAGTCATGGCGCTACAGGATTTGA
TGATTGCTGTACTGTTGTTCTCTCTTGCTTGGATCCAGTATTTTCTCATT
ATGCCTCATTTCCTCCTTTTAGGAAGAATAATGTGTATTCTGTACCATTA
TACATTGTAAGTACATGATTTGGTTTTTTTTTGTTGTTGTTGCTTTGCTT
TTTTATTTTATAGGAGATTAGAATCATCAGATTGTCCTGAATCTCCCTAT
ATACTCTGTTTTTTGTACTTGTTTCTTGTCTGTCTTCTGCTTAACTCTCT
CACCACTTCCTTCTCTTGTTTTCAGTTTCCTTCTTCTTCTGCCCTCTTTA
TGACGTAGTCCCTTTCTCTCTTGTCCGCATTACTTTCTTCCCTTTGCCTT
TTTTTTTTTTTCTTCTTATGTATCTATCATCTCCTACTCTTTTTCTTCTG
TTTTTCCACTTTCTCTTATACCACCCCCTCCTCTTTTTTCATGTTTGT
NCGATGCTGTGAGTAGCCTGGGGGNCGCCTGGTAGCACACTTGTAGGTGA
ACTATAGAAGTACCAGCAACAATCTTGCTGACAGGAAGCAGTCTTAAGGC
ATGTAGAGAACATTCTGGTACCATCTCCCCGGTGGTATCTGTCTCCTGCA
GAGCCACCTTCAAACGCAACCAGAGGTGCCTAGGGCTTTGTTGTTCCCAA
GAGCATCCAGCCCAGGATGCTTTTAGTTTGGGTGTGAGAACAAGCTTTTT
TTACACAATTGAACTAGGATACAGGACAGGGACCTGCCCTTCCTGATCCT
GGCTCAGAGGATTCCATCCTTAGCTGAGTGACTCAGGAGCGCTGGTTGCC
TCCTTTCTGCCACCTGAGTGACTTATGTTCTCCTTTGGAAACAAAACCAG
CCGGCTATCTGTGACAAGTCATCCTGTGACTGTAATATGTGTGCCCTTGA
AGAACCTGTATTTTTGTGACGTCTCTTCTTGTGTGCCTGTGTGCATATGC
GCGATGTTGATGTATAAGCATTTAATATCCTCCTCACATCTACGATGTGT
TACATTAGTCCCGTTTACATATACGCCTCTTCTTCTTCTTCCTACTTCTG
TTTCCTCTTTTCTTCGCTTCCTCAATCATTACTGCCTTTTTTTTTTCTTT
TTTCCTCTCTCACCCTCTCGCTTCTTTCCCATCTTCTCCCTTTCATCTAC
TTTTGACCTTTTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_o09.g1 MSMg01no474_o09.g1 CHROMAT_FILE:
MSMg01no474_o09.g1 PHD_FILE: MSMg01no474_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:30 2005
         (239 letters)



>mm_chr12_29284296_29284934
          Length = 639

 Score =  418 bits (216), Expect = e-121
 Identities = 233/244 (95%), Gaps = 10/244 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgctgacaggaagcagtcttaaggcatgtagagaacattctggtaccatctccccgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 tcttgctgacaggaagcagtcttaaggcatgtagagaacattctggtagcatctccccgg 380

                                                                       
Query: 61  tggtatctgtctcctgcagagccaccttcaaacgcaaccagaggtgcctagggctttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tggtatctgtctcctgcagagccaccttcaaacgcaaccagaggtgcctagggctttgtt 320

                                                                       
Query: 121 gttcccaagagcatccagcccaggatgcttttagtttgggtgtgagaacaagcttttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||
Sbjct: 319 gttcccaagagcatccagcccaggatgcttttagtttgggtgtgagaacaagc-----tt 265

                                                                       
Query: 181 -----acacaattgaactaggatacaggacagggacctgcccttcctgatcctggctcag 235
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggagacacaattgaactaggatacaggacagggacctgcccttcctgatcctggctcag 205

               
Query: 236 agga 239
           ||||
Sbjct: 204 agga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)