BAC Information

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BAC

Clone NameMSMg01-475D08
Chromosome12 (Build37)
Map Location 14,241,068 - 14,241,313
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D08.T7 (MSMg01no475_d08.b1)MSMg01-475D08.TJ (MSMg01no475_d08.g1)
ACCAG557089AG557090
length745805
length of high quality
(start - end)
248 (52 - 299)98 (79 - 176)
definitionCHROMAT_FILE: MSMg01no475_d08.b1 PHD_FILE: MSMg01no475_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:54 2005CHROMAT_FILE: MSMg01no475_d08.g1 PHD_FILE: MSMg01no475_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTACCATATTTCGAAAATACCGCGGAATTCTATATGACTATCTNAAAAA
ATGGAATTATTCTTCCTAACATATCTTTAAATTGATTTAAATTTACATTT
GAAAAATAATGAGACTTTGGATTATGTGCTGTACGAACAGTCACACATTG
CAGACTGGACATACATTGATGCTTACCATATATCAGAAATGTATCTAACC
CCTTAAAAAGGAGGTGATTTTATTTAATTCCTACTGAGGACTGACCATGT
GGTACTACTATGATTTTAATATTACAAGCAAGGGTTCTGTCACACACTAA
GTAAATTCTGATGTGTGAGCATGAGAATCATATTGTCATGGACTAAAAGG
GGCCCCATCGAATAAGAAAGCTCAGAGAGAAGTGGTTCTCAGTTCACAGT
TTCAAGGCAAATTAAGGCCAGAATACAGACACAATGGTGGTCCTTTGGCT
CTAGGTTATAGCACAATGTTCTAGTCAACATAATTGTACTACACATAAAC
CCATGTTCTATGTCACCATGCCCTTTTGTCCTAGTATTATATGATTTTTA
TAGAGGCACCTTTTCTTGGTAACCCTGATAAATCTCTAAAAAAATGTCAC
GTAATCCCACTGATTCACCCCCCTCTAATACTTCACAACAAAAATTTTCT
CTTTTTTTTCCCCTTTAACTTCCTCATTATTCAACACCAACACATTCCCC
CCCCTCTAATTTCACACGGCCTTCTCACTCCCCTCGTTTCCCCCT
CTTCCTCATTATCCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTATGTCAAGAATTATTTTG
CACAATGTTAAAGCATAAAATAAAATCATATGCCCCAGTACAGGGGAATG
CCAGGGCCAGAAAGTGGGAGTGCAGTGGGTTGGGGAGCAGGCTGTCCCTT
CCCCCCTTTTTTCTCTTTCTCCTCCCCCCTCTTCTTTTCTCCCCCTCCCT
TCTTTCTCCTTTTCCTTCTCCCTCCCTCTCCCCTTCTTTTTTCTTCCTCC
TCCTTTTCCCCCCCTTCCTCTTCCCTCTCTTTCCCCTCTCTTTTCCTTCT
CTTCTTTTTCCCTCCCCTCCTTCCCCTCCCCCTTTTTCCCCCCTCCCCCC
CCCCCTTCTTTTTCTTTATTTCTCCCCCCTCCTCTCTTCCCTCTCTTTTT
TTTCCCTTCCCTCTCCCTTTTTTCCTTCTTCCTCCTCCTCTTCTCTCCTC
CCTTCCCCTTCTTTTTCCCCCCTTTCTCCTTTCCCCCTCTTTTCCCTCTT
CCTTTCCCCCTTCCTCTCCCCTTCTCTCCCTCCTCCCCTTTTCCCTTCTT
CCTCTCCTTCCCTTTTTCCCTCCCCCCCTTCCCCTCCTTTTCCTTCCCCC
CCCCCTCCCTCTTTTCCTTTTCTTCTTTCCCTTCCCTCCCCCTTTTCCTC
CTCCTCTTTCCCCCTTTTCTTCTCTTTCTTTCCCCCTCCCTTCTTTTTTT
CTCCTCCTTCCCCCTTTTTTTTTCCTTTCCGCCCCCTTTCCTCCCCCTTC
CCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d08.b1 MSMg01no475_d08.b1 CHROMAT_FILE:
MSMg01no475_d08.b1 PHD_FILE: MSMg01no475_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:54 2005
         (248 letters)



>mm_chr12_14240868_14241515
          Length = 648

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaattattcttcctaacatatctttaaattgatttaaatttacatttgaaaaataatg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaattcttcttcctaacatatctttaaattgatttaaatttacatttgaaaaataatg 260

                                                                       
Query: 61  agactttggattatgtgctgtacgaacagtcacacattgcagactggacatacattgatg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactttggattatgtgctgtacaaacagtcacacattgcagactggacatacattgatg 320

                                                                       
Query: 121 cttaccatatatcagaaatgtatctaaccccttaaaaaggaggtgattttatttaattcc 180
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cttaccatatatcagaaatgtatttaaacccttaaaaaggaggtgattttatttaattcc 380

                                                                       
Query: 181 tactgaggactgaccatgtggtactactatgattttaatattacaagcaagggttctgtc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagaggactgaccatgtggtactactatgattttaatattacaagcaagggttctgtc 440

                 
Query: 241 acacac 246
           ||||||
Sbjct: 441 acacac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)