BAC Information

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BAC

Clone NameMSMg01-475F10
Chromosome12 (Build37)
Map Location 41,349,893 - 41,538,860
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475F10.T7 (MSMg01no475_f10.b1)MSMg01-475F10.TJ (MSMg01no475_f10.g1)
ACCAG557188AG557189
length762790
length of high quality
(start - end)
414 (64 - 477)309 (81 - 389)
definitionCHROMAT_FILE: MSMg01no475_f10.b1 PHD_FILE: MSMg01no475_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:05 2005CHROMAT_FILE: MSMg01no475_f10.g1 PHD_FILE: MSMg01no475_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,349,893 - 41,350,306)(41,538,552 - 41,538,860)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCGCGGAATTCAGAGT
GGTTGCAAATCTGTGTAGACTTCCCATAGTCATAGTGTGGCTTTTAATAA
AATGGGGAGAAGTGGAGCACAGGGAGGTAAAGAAGTGTTCCCAGATTAAA
GAATAAGCTGGGCTTGGTGGCACATAACTAATTTCAGCACTTGGGAGGCC
AAGGAAGGAAAACTCTGAGTTCAAGGCCATCTTAGGCTACACAGACCCTA
TTGTAAAATAAAACAAAATAAAATATAGCTAGTAAATTTCTGTGGGTTTC
TTTAAGCACAATGCTTTTGATCCAAGCCCTTATTTCCTGTACAAATTTCT
GGTTCGATTTTAATAAAACAAGACATAAATAAAAGGCTTAAACTTGGGGG
TCAATCGATCTGTTACCCAGCTTAATCCTGAATCACTGTATTTATGCATA
GAATAGCCACATGAAGATTAAAATTTCAACATCAAAGAACATATCATTTG
TTATCTTTAGCATCATCAGGCCTTGTGTATTATAATGTATTCGTGATTAT
TTCCCCGCAGGCTGGTACAGAGGATTTGGCTTAATAAATCCCCACTTTCT
GGTAAAAACTGCTTTTTGCACTCGTACTTATACGACCCCCCAAAAACTGT
CGCTGTTTAATTTCACTATACTCACACCTCCTAATTCTATCTCCCACACC
TCGGGTGCCTCCTCTCCCCCCCACTACCCCGTGTACCCTTTTCCCCCTTC
CCTGTATCTCTG
ATTCCTTCTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTCCAGACGCTGCTGGT
CCATGATTTTGTCATACAAGGAGGCTTCCATCATCTGGGAAAGTATAGGG
GAAGGTCTGTGAATTCCATCCCACATGTCAGCCACACCAGTACAAGAATG
TGCTTCTGTACACAGATGAAATATTTTAGTTCATTCAGAACAGGATTTGA
TTCCTTTTTAATGCTTTCAGGAGAGGGTCAGCAAGCCAATGTTGTAAATA
CATACTGAACACTTCAGCCTTTGTATTCCCTGGTACGTCTCAATGTGCCA
GAGCACAGGCTACAGCTTACTGATCCCTGAAAGGATCAAGGGCTTTACTG
TGTGCTTCTACCAGAGGAGACAATGTCTACTAGTCTATTATGGAAACGCT
TACCTCATTATAGATATAGACCAGTCCCCCCTTACCGCCCATATTTACCA
CCTCTTTCCTTCCGCACAACTCTTGTGCCATGTCCATCCTGCTTTTCTTC
TCTGCCCCAGCCTTTTTTCTATTTGCCTCAACTCTCCTTTCTCTTTCTTC
CTTTCCCTCCATTCCATCCCCCCCCCCCCCCTCTCTCTCTATTTTCCTCT
CTTTCCCTCCCCCCTTTTCCTTCACCTTTTCCTCCCTTTTTTCTCTCCTC
TTTTCCCTTCCCTCCTTCCCTTTTTTTTCCCCCCTTCCCCCCTATTGTTT
TCTTACTTCTCCCCCCCCTTATCCTCCCCCTTCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_f10.b1 MSMg01no475_f10.b1 CHROMAT_FILE:
MSMg01no475_f10.b1 PHD_FILE: MSMg01no475_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:05 2005
         (414 letters)



>mm_chr12_41349693_41350506
          Length = 814

 Score =  793 bits (410), Expect = 0.0
 Identities = 413/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagacttcccatagtcatagtgtggcttttaataaaatggggagaagtggagcacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagacttcccatagtcatagtgtggcttttaataaaatggggagaagtggagcacagg 260

                                                                       
Query: 61  gaggtaaagaagtgttcccagattaaagaataagctgggcttggtggcacataactaatt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaaagaagtgtccccagattaaagaataagctgggcttggtggcacataactaatt 320

                                                                       
Query: 121 tcagcacttgggaggccaaggaaggaaaactctgagttcaaggccatcttaggctacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagcacttgggaggccaaggaaggaaaactctgagttcaaggccatcttaggctacaca 380

                                                                       
Query: 181 gaccctattgtaaaataaaacaaaataaaatatagctagtaaatttctgtgggtttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccctattgtaaaataaaacaaaataaaatatagctagtaaatttctgtgggtttcttt 440

                                                                       
Query: 241 aagcacaatgcttttgatccaagcccttatttcctgtacaaatttctggttcgattttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcacaatgcttttgatccaagcccttatttcctgtacaaatttctggttcgattttaa 500

                                                                       
Query: 301 taaaacaagacataaataaaaggcttaaacttgggggtcaatcgatctgttacccagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaacaagacataaataaaaggcttaaacttgggggtcaatcgatctgttacccagctt 560

                                                                 
Query: 361 aatcctgaatcactgtatttatgcatagaatagccacatgaagattaaaatttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcctgaatcactgtatttatgcatagaatagccacatgaagattaaaatttc 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no475_f10.g1 MSMg01no475_f10.g1 CHROMAT_FILE:
MSMg01no475_f10.g1 PHD_FILE: MSMg01no475_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:05 2005
         (309 letters)



>mm_chr12_41538352_41539060
          Length = 709

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttccagacgctgctggtccatgattttgtcatacaaggaggcttccatcatctggga 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggttccaggcgctgctggtccatgattttgtcatacaaggaggcttccatcatctggga 450

                                                                       
Query: 61  aagtataggggaaggtctgtgaattccatcccacatgtcagccacaccagtacaagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagtataggggaaggtctgtgaattccatcccacatgtcagccacaccagtacaagaatg 390

                                                                       
Query: 121 tgcttctgtacacagatgaaatattttagttcattcagaacaggatttgattccttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgcttctgtacacagatgaaatattttagttcattcagaacaggatttgattccttttta 330

                                                                       
Query: 181 atgctttcaggagagggtcagcaagccaatgttgtaaatacatactgaacacttcagcct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgctttcaggagagggccagcaagccaatgttgtaaatacatactgaacacttcagcct 270

                                                                       
Query: 241 ttgtattccctggtacgtctcaatgtgccagagcacaggctacagcttactgatccctga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgtatttcctggtacgtctcaatgtgccagagcacaggctacagcttactgatccctga 210

                    
Query: 301 aaggatcaa 309
           ||| |||||
Sbjct: 209 aagaatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)