BAC Information

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BAC

Clone NameMSMg01-475G15
Chromosome12 (Build37)
Map Location 95,623,097 - 95,623,387
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475G15.T7 (MSMg01no475_g15.b1)MSMg01-475G15.TJ (MSMg01no475_g15.g1)
ACCAG557246AG557247
length783753
length of high quality
(start - end)
551 (47 - 597)305 (80 - 384)
definitionCHROMAT_FILE: MSMg01no475_g15.b1 PHD_FILE: MSMg01no475_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:11 2005CHROMAT_FILE: MSMg01no475_g15.g1 PHD_FILE: MSMg01no475_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGG
AATTCTCACCTGAGTTATCACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGAT
TCCACCTCACTCCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATTTTTGTTAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACCATATGTACTCACTGATAAGCGGATATTAGCCCCCAA
CCTAAGAAACCCAAGAATATTAGAATAATTTTCCTTAACACTTGAAACTC
TTGAAAAATGAAGACCTGAATTGTGGACACTATTGCCCTTCCTTATAACG
GGGACCAAAAACCCCTTGGTAGGGGTTTCCAAN
NNNNTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACACACACACACCAAAAC
ACACCTTTCATTTTTCTACCAAAGCAGATGTGTGAGTTGCAGGTTGAATA
GTACTGAGACCTTAGTCAAAAGAGACTGGCGTGAGCTGGGTGTGGTGGCC
ACACCGTTAATCCCAGGATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGT
TTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATA
CAGAGAAACCCTGTCTCGAAAAACCAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNTTTNTNTNTNTTTTTT
TTTTNNTTTTTTTTTTTTTTTNNNNTNNTTTTTTTGTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTC
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTCTTTTTTGTCTTTG
TTTTGGTTTTTTTTTTTGATGTTCCTATTTATTTGCTAATTCCGCTTTCT
ACCTTTCCACACCCTCCCTCTTCCTCTTTTCTTTCTCCCTCTCCTCCCCC
TCTCTCCTTTTCCCTTCCTCTACCTTGCTATTCCGTTTTTCTTCTTCTCT
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_g15.g1 MSMg01no475_g15.g1 CHROMAT_FILE:
MSMg01no475_g15.g1 PHD_FILE: MSMg01no475_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:11 2005
         (305 letters)



>mm_chr12_95623084_95623788
          Length = 705

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacacacacacaccaaaacacacctttcatttttctaccaaagcagatgtgtgagttg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 304 cacacacacacacaccaaaacacacctttcatttttctacaaaagcagatgtgtgagttg 245

                                                                       
Query: 61  caggttgaatagtactgagaccttagtcaaaagagactggcgtgagctgggtgtggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caggttgaatagtactgagaccttagtcaaaagagactggcgtgagctgggtgtggtggc 185

                                                                       
Query: 121 cacaccgttaatcccaggatttgggaggcagaggcaggcagatttctgagtttgaggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 184 cacaccgttaatcccaggatttgggaggcagaggcaggcagatttctgagtttgaggtca 125

                                                                       
Query: 181 gcctggtctacaaagtgagttccaggacagccaaggctatacagagaaaccctgtctcga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 124 gcctggtctacaaagtgagttccaggacagccaaggctatacagagaaaccctgtctcaa 65

                                                              
Query: 241 aaaaccagagagagagagagagagagagagagagagagagagagagagaga 291
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aaaaccaaagagagagagagagagagagagagagagagagagagagagaga 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)