BAC Information

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BAC

Clone NameMSMg01-475H24
Chromosome12 (Build37)
Map Location 114,229,435 - 114,229,752
singlet/doubletsinglet
Overlap geneBrf1
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Btbd6
Downstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H24.T7 (MSMg01no475_h24.b1)MSMg01-475H24.TJ (MSMg01no475_h24.g1)
ACCAG557312AG557313
length1,817797
length of high quality
(start - end)		---320 (79 - 398)
definitionCHROMAT_FILE: MSMg01no475_h24.b1 PHD_FILE: MSMg01no475_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:18 2005CHROMAT_FILE: MSMg01no475_h24.g1 PHD_FILE: MSMg01no475_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGATGAGTTATCTGTGTCCTCTCTCTATCCATCACCCTTATACACCACA
CTAACTAAGTCCCTATACACTCATTTACCATCTATCTCATATCTTGTATC
TCGACTACGTCGCTCTATGCCCGTCATCGCGACTTCTTACTCTTTATTTC
TTCCGCATATATTCGCGCCGAAACGTTCATGCACGTATACTCACAGATTT
CATTCTCTATAATCACCACCTTCTGTTGCGGCACGGTCGTCATCCACGTA
TCGATAGTAAATCATAATACTCGCTCTCTACTAATGAGTTAATGGTATAT
CATGTAGATACTCTCTATGACTATAACCGCGCGCATGTCGATAGTCNTGC
GTGTACCGATTACAGCGACCAATCACGGCTCACTCTAATGTATCTATGTG
TCGTTACGAACTGCCATCTCACATCGCTCGCTCTATTCCGTGACTCGAGC
TTTTGCGCCGGTCGTGCCTAGCATGCGATCATATATAACGAGTGAGCGAT
ACGTCGTCATCACGTATCACATGCCTCTTATCTGCTATATATGGTATTGA
TGTGNCAGGCGGTGGAATCTATCTCTCTAATACATCCGACACTGCGCGAC
TCAGATTTCATGTTGTTAGNACTAACTANACTCGCGTGAGCATTAATCTA
CTGCGAGATCGCTCTCATAGACGTAGTATACATCGTTACACTTACTTTTA
AACACTCCTACCTGTCGATATATATATATACATGAGTCCTGTCGTGTCCT
ACTANTCACTCTCTNGTCGACANATTTGTGTTACCTGATCNCGACACCGA
TGTTCGGCGGCGACGATGTCCATTGACACGTAGTCTGCACAACGATCATC
TCTGTTGCGCACTTCGCATTCTCATTATCTTCTCTCCCGCGTGGTGATAA
TTATGATGACACGATACCGACCTACTGTCTAGTCACTAGACATAACGCAC
CACGGCATATGATGAGTATTTCATTCGTCAGCACTACAACTAGANGATGT
GATGTCTGTCTCATCTAACAGCGCAGTCACAGTCTCTGCTCNTATTTATG
TCGTCTAGCACCATATTAATATACGTATTCATTATCGTCTCGCATCTGTC
TCACCGTGCACTCGTAGATATNCTGTATNGTATCNAAAGTCACGCGTCGC
CGNGTGTGTGTCGATTGGCGACGTATCGTGCTGATGACTACACTGAGATT
ATGACAACTAATCNATGGCGCTGACGCGTAGTACTCTATTATANTCCGTA
GCTGACGCACGACGCTTATCTATAACTCCAGTCGCGTTGTCGCGGTCGTC
GCCATTCCGTCTACGCNTCACTATTACTGTTATTAGACACTACTGTAGCT
CTCGCTGCGTCGATTGTGTATGCCAGTGTTGATCGCGATCAGCGCGTACT
ACTAGATCTCGAGTGNTCTGCGCTATTCCANGTAGAGGGACCGTCGCGTA
GTACANCGCAGATCTTTCAGCTAGCTACTCTATGTTTCGTGTCANGANAC
GCGCACTGTGCGCGCGATGNTATATACGTGTATGCGANGCGGCTATCTGC
TGACGGTACTCATCGTTGTCAGTCACCNCAGCTCGATCANCGTGTCGCGC
TATCGACGCGCCGACGATTGCATCTACGATATACGCTCGTGATCTATATG
TTTCAGCCACATGGCTAGATGCGNAGTGAGCGTGAGGTNGATGCTCGTCG
CGCTAACTCTGNTAGCTCGAGCATANCTATCATCTGAACTTTGCTGTGCA
TGATCGAGACTGATGTCTATCAGCACGACGACTCTCGACCGATGATCTCT
TCATCTTCNACTACTGN

TTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAAACATAAACACTTCCCA
ATTTCAAACTTACCACAAGGCTAGGAGCCAAACAAAAGCATGACATATAT
AGTCCAGCAGAACAGAACAGAGGGTCTGGAAATGATTCTCAGCAAGGGAG
GGTGCCAACTGGGAAAATATAATCTTTTCACTCAAACACTGAAAATGCAC
ATAAGATGGAAGCTGGACCCAGTCTCTTATCACTTGTTCTAACTCACAAG
GACCAACCCCAAAAACATAACAGGAATACTCAGATGGTCAACCCCAGAGA
ACAGAAGATATAAGCATCAGTTTGGAGAGCAGGGTGTGGGGTGGGGGCNN
CCCTNCTTTNTCTTTTTTCCTCCCCCCTCCTTCCTTCTCTTTTTTTCCCT
CCCCTCTCTCCCTTTTCTTTCTTTCCCTCTTCTTTCCCCCCTTTCCTTTT
TTTTCCCCTTTTCTCCTTCCCCTCTTTTCTCTTTCCTCCCCCTTCCTCCC
CTTTCCTCCCCCTCCCCTTTTCTCCTCTTTCCTCCCTCCCTTTCTCCTCC
TCCCCTTCTCTCCTTTTCCTCCCCTCCCCCCTCCCTTTCTTCTCTTTTCC
TCTCCTTCCCTCTCTCCTTTTCCTCCCCCTTTTTCCCCCTTTTTTTCTCT
CCTTTCTTTCCTCTCCCTCTTTCTTTTTTTTCCCTCTCTTCCCCCCCTTT
CTTTTTCTCCCTTTCCTCTCCTCTTTTCCTCTCCTCCTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h24.g1 MSMg01no475_h24.g1 CHROMAT_FILE:
MSMg01no475_h24.g1 PHD_FILE: MSMg01no475_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:18 2005
         (320 letters)



>mm_chr12_114229235_114229953
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaaacataaacacttcccaatttcaaacttaccacaaggctaggagccaaacaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaaacataaacacttcccaatttcaaacttaccacaaggctaggagccaaacaaaag 260

                                                                       
Query: 61  catgacatatatagtccagcagaacagaacagagggtctggaaatgattctcagcaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgacatatatagtccagcagaacagaacagagggtctggaaatgattctcagcaaggg 320

                                                                       
Query: 121 agggtgccaactgggaaaatataatcttttcactcaaacactgaaaatgcacataagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgccaactgggaaaatataatcttttcactcaaacactgaaaatgcacataagatg 380

                                                                       
Query: 181 gaagctggacccagtctcttatcacttgttctaactcacaaggaccaaccccaaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagctggacccagtctcttatcacttgttctaactcacaaggaccaaccccaaaaacat 440

                                                                       
Query: 241 aacaggaatactcagatggtcaaccccagagaacagaagatataagcatcagtttggaga 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaggaa-actcagatggtcaaccccagagaacagaagatataagcatcagtttggaga 499

                              
Query: 301 gcagggtgtggggtggggg 319
           |||||||||||||||||||
Sbjct: 500 gcagggtgtggggtggggg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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