BAC Information

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BAC

Clone NameMSMg01-475J06
Chromosome12 (Build37)
Map Location 37,833,155 - 37,833,473
singlet/doubletsinglet
Overlap genenone
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J06.T7 (MSMg01no475_j06.b1)MSMg01-475J06.TJ (MSMg01no475_j06.g1)
ACCAG557372AG557373
length729776
length of high quality
(start - end)
249 (51 - 299)318 (82 - 399)
definitionCHROMAT_FILE: MSMg01no475_j06.b1 PHD_FILE: MSMg01no475_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:24 2005CHROMAT_FILE: MSMg01no475_j06.g1 PHD_FILE: MSMg01no475_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATATTTCGAAAATCCGCGGAATTCTCAATTCTTTTCTCTATGCT
CCAAATACAAGGGGAAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCA
AAGCACACATTGCACCTCACACAATAATAGATGTCAACACCCTACTCTCA
CCAATGGACAGAACCTGGAAACAGAAACTAAACAGAGACACATGGACACT
AAGAGAAGTTATGAAAAAAATTGATTTAACAGATAGATACAGAACATTTT
ATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTC
TTCTTTATTGACCATATAATTTTTCACAAAACAGGCCTCCACAGATACAA
AAATATTGGAATTTTCCCATGCATCCTATCAGATCACCACAGACTGCACC
AATAACAGCATAAATAATAGAAAGCCAACATTCACGTGGAAACTGAACAA
CACTCTACTCAATGATACATTGGTCAAGGAAGATATAAAGAAAGAAATTA
AAGACTTTTTATAGCTTAATGAAAATGAAGCCCCACCTACCCCAACTTAT
GGGACCCATTGAAAGCAGCCCTAATAGTAAACTCATAGCCCTGAGTGCCT
CCCACAGAAACCTACGAGACGCTTTACCAACCTTTTGACCTCTCATCCAT
ACATCCCTTAATATAAGGAAGCAACTTCCCCCCCTCAAGCGCTCAATACG
CTCTAATATTTTCACTTTCCGTTTAACTT
TTCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGATTTGTAAGCACTGC
TTTCTTTAACGGAAATTGAGCCCTATTTTGAGGGAAATTAGTTTTGCAGA
CTTCGTTAGGCGGAAAAAAAAAAAAAAAACCTAAAACTTTTGTTCACCAG
CCGCTCAACGTTTCAGTCTGAGGCTGAGCTGGAACCTGCAGCAAGGCTTT
GACGGTAAGGTTCTTTGCTTGCAATTTGGGAATCTTATCCTGAAAAGGGG
CGCTGATCATTCTTGGGGTACATGACTGCTAGGAGCTTTAGGCACAGGCA
GGATGGCTTCCCGGACTTAAAGCTTAAGACTACTTCTTCTGCCACTACCC
ATAACCTTGGCTTTTTAAGAATTACAACAGAGAGTGGGAAACACATCCCT
CACATAATACCGGAATACATTTTGATTCCCCCTGCTCTTTATGGCCCCCA
TATTCCTTCCCGCTCTTTTTCCTACCTTGCCACTTCCGCCCCGTTCTCCC
CCCTGCCCTTCGCTCCTCTTTCCTCCCTCCCTTGTTCCATCGTCGCTTTG
CCTCTTTTCCTTCCCCTTCCCCCTCCCTTGTTCCTTTTTTCCTTCTTTCC
CTCTCTCCTTTCCTACCCCATTTCCTCCTTATTTATCTCTATCATCCCCC
CCCCCTTTCCTTTTTTCTCCCTCCTCCACCCTTTTTTTTTTCTTTTCCCG
CGCCGTTTTCCTCCCCCTCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j06.g1 MSMg01no475_j06.g1 CHROMAT_FILE:
MSMg01no475_j06.g1 PHD_FILE: MSMg01no475_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:25 2005
         (318 letters)



>mm_chr12_37832955_37833673
          Length = 719

 Score =  576 bits (298), Expect = e-169
 Identities = 314/320 (98%), Gaps = 3/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagatttgtaagcactgctttctttaacggaaattgagccctattttgagggaaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caagatttgtaagcactgctttctttaacggaaattgagccctattttgagggaaattag 460

                                                                       
Query: 61  ttttgcagacttcgttaggcggaaaaaaaaaaaaaa--aacctaaaacttttgttcacca 118
           ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 459 ttttgcagacttcgttagg-ggaaaaaaaaaaaaaaagaacctaaaacttttgttcacca 401

                                                                       
Query: 119 gccgctcaacgtttcagtctgaggctgagctggaacctgcagcaaggctttgacggtaag 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gccgctcaacgtttcagtctgaggctgagctggaacctgcagcaaggctttgacggtaag 341

                                                                       
Query: 179 gttctttgcttgcaatttgggaatcttatcctgaaaaggggcgctgatcattcttggggt 238
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gttctttgcttgtaatttgggaatcttatcctgaaaaggggcgctgatcattcttggggt 281

                                                                       
Query: 239 acatgactgctaggagctttaggcacaggcaggatggcttcccggacttaaagcttaaga 298
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 acgtgactgctaggagctttaggtacaggcaggatggcttcccggacttaaagcttaaga 221

                               
Query: 299 ctacttcttctgccactacc 318
           ||||||||||||||||||||
Sbjct: 220 ctacttcttctgccactacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)