BAC Information

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BAC

Clone NameMSMg01-475K21
Chromosome12 (Build37)
Map Location 69,608,104 - 69,608,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475K21.T7 (MSMg01no475_k21.b1)MSMg01-475K21.TJ (MSMg01no475_k21.g1)
ACCAG557449AG557450
length791789
length of high quality
(start - end)
254 (70 - 323)365 (79 - 443)
definitionCHROMAT_FILE: MSMg01no475_k21.b1 PHD_FILE: MSMg01no475_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:32 2005CHROMAT_FILE: MSMg01no475_k21.g1 PHD_FILE: MSMg01no475_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACCTGATGACCACCGAATGTCTGAGAAGCACCTGAAAAAATGCT
CAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCATAATGGCTAAGATCAAAAATTCATGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCTCTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGATTATTCTCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCTATTTACCCACTGATTGTGGTAATGGGCAGT
GGTCTCGAGTGGCTTCCTGTGATTATTCCCATTGTTCTCTAGACCAGCTG
AAGGCTCTAAGCGGACCACACGAGTTTATGTTCACATTTCCAAAAGCCTT
ATAGCTTAATTAATAGTTTACTATCCAAATTTTTATTCCCAATTTGATAT
ACTAAGCATTTTAGATGGCTTCTACCTATCTCCAGCGAAAAAAAAAACTT
AAAACCTTCTGAGTAAAAAGCAATATAAATTGATACTATTTATAACCCAC
AAACACGTAGGTTATTATCTTTATCAAATTTACTCCAGGGCCCCAACCCG
CTTTTTTTTTTCTACACTGGCACTGGCCTTGAGCCAAAAAACAAACCCGT
CTTCCCACCCCCTGGCGCATCGAAATTTCTACAACTTCCCG
NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAGATTCACATCAGCAGC
TCAGCCTGTGGAAGGTGACCTGGGAACAGACATTCTTTAAAAGGGCCCTA
GCAAGATTTTTGTTGACATTTCTCTGCTATAACCTATTGTATTTATATGA
TGTTTCATAATGATCATTTATAGATACAGGCTGTAGCTTTGAGATTAAGA
GAAAGTGAGTCACTAAAAAAAAAAACCAAAGTATTAAAAATTCATTTACT
TTTTTTTTTTAAATGGACTCTCATGTTGCTTTAGGCTGATCTTGAACTCA
CTATGTAGCCTATGTAAACAAGGATGGCATTGAATTTTTGATCCAACTGC
ATCAACTTCCCAAGTGTGTGGTTGGTTGTATGATGCTGCAGTTGAAACCC
AGGGCTTTGTGCATGCTAGGCACACATTCCATAAACAGCATATTCCCCAC
CCCCTCTTTTTACTATTTTTTTACCCAAAGGAAACTATGGTCATTAATAT
TTTGGACCCAAAAATTCTTACCNAACATGTTGGCCCCTCGAAGAAATTTT
TCCACATTTTCAAACCTTTATTTTCTCCTTTTTTCCCAAGGGACAAGGCC
TTAATCCCTTTGTAAACTTTTCTCTCCTTTTCCCCACCCGCGCCCGTCCC
TCCTTTCATTCCCCCCCTTTTCATCTCCCCCCCCCCTAAAAACCCTCTCC
TCTCCCCGTTCCATCTCTTTTATCTCTCTCTTCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_k21.g1 MSMg01no475_k21.g1 CHROMAT_FILE:
MSMg01no475_k21.g1 PHD_FILE: MSMg01no475_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:32 2005
         (365 letters)



>mm_chr12_69607904_69608670
          Length = 767

 Score =  675 bits (349), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 4/369 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgagattcacatcagcagctcagcctgtggaaggtgacctgggaacagacattcttt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgagattcacatcagaagctcagcctgtggaaggtgacctgggaacagacattcttt 260

                                                                       
Query: 61  aaaagggccctagcaagatttttgttgacatttctctgctataacctattgtatttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagggccctagcaagatttttgttgacatttctctgctataacctattgtatttatat 320

                                                                       
Query: 121 gatgtttcataatgatcatttatagatacaggctgtagctttgagattaagagaaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtttcataatgatcatttatagatacaggctgtagctttgagattaagagaaagtga 380

                                                                       
Query: 181 gtcactaaaaaaaaaaa--ccaaagtattaaaaattcatttacttttttttttta--aat 236
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||   |||
Sbjct: 381 gtcactaaaaaaaaaaaaaccaaagtattaaaaattcatttacttttttttttttttaat 440

                                                                       
Query: 237 ggactctcatgttgctttaggctgatcttgaactcactatgtagcctatgtaaacaagga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactctcatgttgctttaggctgatcttgaactcactatgtagcctatgtaaacaagga 500

                                                                       
Query: 297 tggcattgaatttttgatccaactgcatcaacttcccaagtgtgtggttggttgtatgat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcattgaatttttgatccaactgcatcaacttcccaagtgtgtggttggttgtatgat 560

                    
Query: 357 gctgcagtt 365
           |||||||||
Sbjct: 561 gctgcagtt 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)