BAC Information

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BAC

Clone NameMSMg01-475N21
Chromosome12 (Build37)
Map Location 100,563,851 - 100,564,271
singlet/doubletsinglet
Overlap geneChes1
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475N21.T7 (MSMg01no475_n21.b1)MSMg01-475N21.TJ (MSMg01no475_n21.g1)
ACCAG557593AG557594
length772750
length of high quality
(start - end)		534 (73 - 606)422 (83 - 504)
definitionCHROMAT_FILE: MSMg01no475_n21.b1 PHD_FILE: MSMg01no475_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:47 2005CHROMAT_FILE: MSMg01no475_n21.g1 PHD_FILE: MSMg01no475_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAAT
TCTCACCTGAGTTACACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGATGATCTTGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGTCCCAACTGGTAAGAAAGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAAT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAA
CTCACACAATATGTATTCCCTGATAAGTGGATATTAGCCCAGAAACTTAG
GATACCCCAGATATAATGTACAATTTGCTAAACGCATGAAACTCAGGAAG
AACGAAAACCCACGGGTGGACCCCTTTGCCCCTTCTTAGAAAAGGGAAAA
AAAAACCCCTGGGAAGAGTTTN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGGCTGCCCCTGGC
TGCTGCGCTCTGGGGGTCCCTAGGAGGAAGGAACCTGTCTTGTTTGCATC
CTCTTGTCTGGACCTGCACCCCTAAAGGGGTGGAACCAAAGGAAGGGATG
GGTGCTAAAACGCAAAACAAAATCTTTGTGCCTTTTCCAGGGAGGGTGCT
AAAACATACATAACATGAAGCTGCCATCTGAACTTTTTTTTTTTTTAAGT
GCAGCTAGGTGACATTTGGGACATTCCTATTGTGTAATCAACTCTGCCCC
TATCTGTCTCCAGAGCATCATCCCAAACAGAAAATTACAGAGGAGATTTC
TGTGACGGGCTTCCTTAGGCTGTTTAGCACAGTGTCTCCACTGCTCATCC
ACGTTGCGGCACGTCCTTTTTAAGGCTGACTAGTGCTTCCCCGTGCACAT
TCTGCCTGACCACCTACGGATGGCCTCTGGGTTGTTTGCACCACCACTGA
TGTCCTTTAACAAGGTGTAAGTGTACTTACCCTCTGTGCTGAATGAAACC
CCAATAAAAAAAATAAGCCTTCAATTCTCCGGTCGACTCCCCGCCCCGTT
CCATATCCCCCACCGAAAATTCCCCTTTTTTTCCTGTTCCACGACCTTCT
TTTATTTCCCGTTTCCCAACACCTTGCCCTCTTCCTCATTCCAATAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_n21.g1 MSMg01no475_n21.g1 CHROMAT_FILE:
MSMg01no475_n21.g1 PHD_FILE: MSMg01no475_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:47 2005
         (422 letters)



>mm_chr12_100563651_100564472
          Length = 822

 Score =  770 bits (398), Expect = 0.0
 Identities = 416/422 (98%), Gaps = 1/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaggctgcccctggctgctgcgctctgggggtccctaggaggaaggaacctgtcttg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaggctgcccctggatgctgcgctctgggggtccctaggaggaaggaacctgtcttg 260

                                                                       
Query: 61  tttgcatcctcttgtctggacctgcacccctaaaggggtggaaccaaaggaagggatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcatcctcttgtctggacctgcacccctaaaggggtggaaccaaaggaagggatggg 320

                                                                       
Query: 121 tgctaaaacgcaaaacaaaatctttgtgccttttccagggagggtgctaaaacatacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaaaacgcaaaacaaaatctttgtgccttttccagggagggtgctaaaacatacata 380

                                                                       
Query: 181 acatgaagctgccatctgaactttttttttttttaagtgcagctaggtgacatttgggac 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||
Sbjct: 381 acatgaagctgccatctgaactttttttttttt-aagtgcagctaggtgacggttgggac 439

                                                                       
Query: 241 attcctattgtgtaatcaactctgcccctatctgtctccagagcatcatcccaaacagaa 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 attcctattgtgtaatcaactctacccctatctgtctccagagcatcatcccaaacagaa 499

                                                                       
Query: 301 aattacagaggagatttctgtgacgggcttccttaggctgtttagcacagtgtctccact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 500 aattacagaggagatttctgtgacgggcttccttaggctgtttagcacagtgtctccacg 559

                                                                       
Query: 361 gctcatccacgttgcggcacgtcctttttaaggctgactagtgcttccccgtgcacattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctcatccacgttgcggcacgtcctttttaaggctgactagtgcttccccgtgcacattc 619

             
Query: 421 tg 422
           ||
Sbjct: 620 tg 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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