BAC Information

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BAC

Clone NameMSMg01-475P06
Chromosome12 (Build37)
Map Location 86,217,210 - 86,217,529
singlet/doubletsinglet
Overlap geneLtbp2
Upstream gene2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2
Downstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P06.T7 (MSMg01no475_p06.b1)MSMg01-475P06.TJ (MSMg01no475_p06.g1)
ACCAG557659AG557660
length707789
length of high quality
(start - end)
422 (14 - 435)320 (81 - 400)
definitionCHROMAT_FILE: MSMg01no475_p06.b1 PHD_FILE: MSMg01no475_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005CHROMAT_FILE: MSMg01no475_p06.g1 PHD_FILE: MSMg01no475_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCAGAGGATCCGCGGAATTCTCTCTGTTCCAAGGTTGGCCATAAACT
CACAGAGATCCACCTGCCTCTGCCCCTGAGTGCATGTGCCATCCCCCTCC
CCCAGGCACACAACTATTATCCAGTTTTTTTTAGTGTGAAGTTCAGTAAT
ATTAAATAAATAATAAATTCATGCTGCTATACCACTTGATCGGCATAACT
TCTCACCTTGAAAGCGAAAATGTCTTCATTAAGCGTAAACTCCCTGCCTT
GTCTCCCCTCTGCTTCCGACAGCTGCCAGTCAGTTCACATTTCGCCTCTA
CGGGTCCGGTCTGAGCCCAGACCCCAGAAACCTCACAGGAAAAAAAAAAC
ATACAGAGTTTGTCCTTATATGGTGCCCCGTTTCCCTAGCACGGCATCCT
TGAGGTTCATCCATGTTGTAGCATGCGGCAGGCCACGCAGGGCGCGTGCG
CAGTCCTCTGAGCGGCTGGAGACTAGGATCCCGGAACCTGCGAGCCATAT
CAGAATGAGTTCCTGGAAGTAATGCTTAACTTGCAAGTCGCATGCCCTCT
GTCGTTGTCCTTGCATAACATTATGAACCCTTGTTCGTTCCCTCATAATC
ACCTCTCTTTTATTATGCTCTTTCCTTCTTTCTTCTCGTTTTAAACCACT
CCCTCTTCCGTTCCCTCTTTTTTTCCCTTTTTCTTTTTTTCCCTTCCTAT
ATACTAT
NCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTCCCGTAATAAGGGG
GCCGAGCTGTCCCTCCAAGGAGGGGGGCATGGCGTGGATAAAAGAGGCGA
AAAAGCAGGGGGCGGTTTCCAAAAATAAAACCCTTCGGTTCCCCTTCAGA
CGGCGGCAGTGCGGGAGCGAAGGTGCGGCAGGCTCGGGCTCGGTGCGCAG
CCCGGGCAGCTCACGCCATACAGCCCTTGCCTAGGAACCCCTGGACCCCC
AAACGGCTGTTTCAGAGGTCCCCTAGACGGGAAGGGGCAAGTCGCCAGGC
GGGTCTGTGGAGCGAACGATGGAGAGCACCTCCCCGCGAGGTCTCCGGTG
CCCATAGCTCTGCAGCCACTCTGGCGCCATGACAGTGTCGAACACCGCTC
GCTGCTCCTGATGCTTCCGACGTTTGCGTCCGCATGGGCTTCTTGTCCCC
TGTTCTGCTTCGCCTTGTTTTGTAACTACTCCGCCTTCTTGTCTCTTTCT
CCCCCCTACACCTTCTCTCCTCTTCCCTCACGTCCTTTTTTCTTCCTTCC
CTCCCCTCCTTTCCCTCCCCCCCACCCTCCCTTTTTTCTTTTCTTCCTCC
CATTCCCCTCACCTTTGTCCTCTCCCTTTTCCTCCTTTTATCCTCTCCGA
CTCTCCCCCTCCCTCTTCTTTTTTTTTCCCCCCTTCCCACCTTTTTTTTT
CTCCTATTCCCTCGCCTTTTCCTCCCCTCTTACCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p06.g1 MSMg01no475_p06.g1 CHROMAT_FILE:
MSMg01no475_p06.g1 PHD_FILE: MSMg01no475_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:54 2005
         (320 letters)



>mm_chr12_86217010_86217729
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 318/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctcccgtaataagggggccgagctgtccctccaaggaggggggcatggcgtggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttgtctcccgtaataagggggccgagctgtccctccaaggaggggggcatggcgtggata 461

                                                                       
Query: 61  aaagaggcgaaaaagcagggggcggtttccaaaaataaaacccttcggttccccttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaagaggcgaaaaagcagggggcggtttccaaaaataaaacccttcggttccccttcaga 401

                                                                       
Query: 121 cggcggcagtgcgggagcgaaggtgcggcaggctcgggctcggtgcgcagcccgggcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cggcggcagtgcgggagcgaaggtgcggcaggctcgggctcggtgcgcagcccgggcagc 341

                                                                       
Query: 181 tcacgccatacagcccttgcctaggaacccctggacccccaaacggctgtttcagaggtc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcacgccatacagcccttacctaggaacccctggacccccaaacggctgtttcagaggtc 281

                                                                       
Query: 241 ccctagacgggaaggggcaagtcgccaggcgggtctgtggagcgaacgatggagagcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 280 ccctagacgggaaggggcaagtcgccaggcgggtctgtggagcgaacgatggaaagcacc 221

                               
Query: 301 tccccgcgaggtctccggtg 320
           ||||||||||||||||||||
Sbjct: 220 tccccgcgaggtctccggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)