BAC Information

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BAC

Clone NameMSMg01-476B22
Chromosome12 (Build37)
Map Location 11,149,488 - 11,149,903
singlet/doubletsinglet
Overlap geneKcns3
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, LOC628276
Downstream geneMsgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B22.T7 (MSMg01no476_b22.b1)MSMg01-476B22.TJ (MSMg01no476_b22.g1)
ACCAG557786AG557787
length745794
length of high quality
(start - end)
105 (52 - 156)416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no476_b22.b1 PHD_FILE: MSMg01no476_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:07 2005CHROMAT_FILE: MSMg01no476_b22.g1 PHD_FILE: MSMg01no476_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCACTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGA
ATCCGCGGAATTCTCACCTGATGACCACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGGAGATTCCACCNTCACANCCAGTCAGAAATGGCTAAGATCAAAACTT
CAGGTGACAGCAGATGCTGGCGTGAATGTGGAGAAAGAGGAACACTCCTC
CATCGTTTGGTGGGAGTGCAGGTTTGGTACAACCACTCTGTAAATCAGTC
TGGGGTTTTCTTCAAAAAATTGGACAAAAGAACCACCGGTTTTTTTTTCT
GGAAAAACCCTCTCTCCTGGGATATAAAATCCAAAAAAATGCCCCCACCT
GGGAAAAAAAAAAACCATTGGCCCCCCCCATTTTCTTCTAATCGCGACCT
TCTTTTTTTTCTATAATAACCCCCCTAATTTCTTGGGAATAAAAATAACC
CCAATATGCGCCCCTCTCCAAAAAAGAAGATTGTGCGCCCCCCCCCCTTT
ACCCTTTTGGTACTTCTACCCCCTCCTCTTCTTCCCGACGGAAGTTGGCC
CTCTACCTTCATCTTCACCCCCATTCTTTACCTTTTTATCCCCCAATCCA
TTTACTCCTCCTTCTTCCTTCTATTTCTTTCCCCTTTTTTTTTACCCCCC
TCCCCCTATTTCCCCCCCCTTTTTCATCCCTCCTCCCTCCCACTC
AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCACATAAACCAGGCTGGCCTCAAACTCAAAG
AGATACACCCACCTCTATCTCCGGAGAGCTGCAATTAGCATGAGCTATCA
TGCCCAGTGGGTTAAAGACTCTTTTTGGTCAAGAAGACTTAAATCCTGGC
AAGTAGTGTTTTCAGATATTAGGCAGCCAGCAGACTGGATCCAGGAGCTT
GGATATGCTTATGTCTCTTTACTTTTCTTCTGCTACAAAGAAGTCTGGCT
TTCTCTAACTTTGATTTTTTTGCCAAGGTAAATGTAAAAGTATCCCCTAT
GATTTATTTGAGGTAAAAGTTATAATTGGCCAAAAAGATGGGAGACGTTG
TGGTTAAAGGCTGTGGTTTGTGCATTTAGCCTGAGAAGACGCTTTGGTTC
TGGCAAGGATGTTTTCACATTCTAGTCTTTGAAGTCAATAAATAAGACAT
ACCAGGCAGTGGTTGTCTCGTGGCTTTTTATGATGCCCATTTTTTTTTTT
CACTTTTTTTTATCTACGCATTCTCTCTTTTTTTCCCTATTTCCGACCCC
ATATCCCCTTCCCCCCCTCCCCTTCTCTCTCTTTTTTCCTATCTCCCTTT
TGCTCCCCTCTTTTTTTTTTTCTCTTCCTTTTTCCTTTTTTTTTTTACCT
TTTTCTTTCCTTTCTTTTTTTCTCTTTCTTTTCCCTCCCCTTTTTTCCCA
TTTTCTCCCCTTATCCCCCCCGCTTTTTATCTTCCTCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b22.g1 MSMg01no476_b22.g1 CHROMAT_FILE:
MSMg01no476_b22.g1 PHD_FILE: MSMg01no476_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:07 2005
         (416 letters)



>mm_chr12_11149177_11149992
          Length = 816

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acataaaccaggctggcctcaaactcaaagagatacacccacctctatctccggagagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acataaaccaggctggcctcaaactcaaagagatacacccacctctatctccggagagct 668

                                                                       
Query: 61  gcaattagcatgagctatcatgcccagtgggttaaagactctttttggtcaagaagactt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gcgattagcatgagctatcatgcccagtgggttaaagactctttttggtcaagaagactt 608

                                                                       
Query: 121 aaatcctggcaagtagtgttttcagatattaggcagccagcagactggatccaggagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaatcctggcaagtagtgttttcagatattaggcagccagcagactggatccaggagctt 548

                                                                       
Query: 181 ggatatgcttatgtctctttacttttcttctgctacaaagaagtctggctttctctaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggatatgcttatgtctctttacttttcttctgctacaaagaagtctggctttctctaact 488

                                                                       
Query: 241 ttgatttttttgccaaggtaaatgtaaaagtatcccctatgatttatttgaggtaaaagt 300
           ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttgattcctgtgccaaggtaaatgtaaaagtatcccctatgatttatttgaggtaaaagt 428

                                                                       
Query: 301 tataattggccaaaaagatgggagacgttgtggttaaaggctgtggtttgtgcatttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tataattggccaaaaagatgggagacgttgtggttaaaggctgtggtttgtgcatttagc 368

                                                                   
Query: 361 ctgagaagacgctttggttctggcaaggatgttttcacattctagtctttgaagtc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgagaagacgctttggttctggcaaggatgttttcacattctagtctttgaagtc 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)