BAC Information

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BAC

Clone NameMSMg01-476C13
Chromosome12 (Build37)
Map Location 94,945,749 - 94,946,018
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C13.T7 (MSMg01no476_c13.b1)MSMg01-476C13.TJ (MSMg01no476_c13.g1)
ACCAG557816AG557817
length767754
length of high quality
(start - end)
232 (72 - 303)274 (326 - 599)
definitionCHROMAT_FILE: MSMg01no476_c13.b1 PHD_FILE: MSMg01no476_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:10 2005CHROMAT_FILE: MSMg01no476_c13.g1 PHD_FILE: MSMg01no476_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAACACGGACCGCGGAA
TTCAAGGTTTTCCTCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCTCACTTTCTCCCTATCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCATTTGGACAACAAAAGGAGATCAAGGGGATA
CTAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATACAAGTGACTTTTTTTATTCCACCAGAGAACTCCTAAACCTGA
TAAACAGCTTCGGTGAACCAGCTGGATATAAAATTAACTCTACCAAGTCA
ATGGCCTTTCTCTAAACAAAGAATAAACAGGCTGAGAACGAAATTAGGGA
AACAACACCCTTATCAATAGTCACAAATCATATAATATGTCTCGGCGCGA
CTCTACTGACGCGAAAGATCTGCGCGATAAAAACTTTTAGTCTCTGACTA
ACGACATTCCAGACGACCTCCGAAGACGCAAACATCTCTCATGCTTTTTG
CATTGCCCGGCTTTTCCTTGTCAATACGGCTATTCTTGCCCAACGCCACC
TTACCATTCTATGCCCCCCCTATCCTTATCTCTTTTCCCCTTCCCCCTAT
GCTTTTCTAAGTAGAACCTCGCCACCTCTTCTGGACCTATCCTCAAACCT
TTGCCACACCTCATTCN
AATGATAGCGGGAGGCCTGGNGGNCGCCTTTTCATATCAGTTTAGGTGAA
CNANAGATTTTCTAAAAACAATCTTTGTTCAGCTCTGAGCCCCATTTTTA
ATGGGGTTATTTGATTTTCCGGAGTCCACCTTCTTGAGTTCTTTTAAAGT
CTTGTTAGTGCAGGTTTCATTTGTAAGGAGGCCTAATCTACTTACAGGCA
AAATAAGTCAGATCATGTTTTTTCTATTCCTTTTGAAAATCAAAGATTTT
TATAAGCATACTTGGGAAATCTCAACATGGGTCTAGGAGGTATAAGATTA
ATAATAATAATAATTAGATCATTTATAATAACAATAATAATAGAAAAGCA
TTTCTCATACCCAAAACTCCCTTCTCCAGTTGACAACTGTGAATAAAACT
TTGGCTTCTATCCTACATAGTTAAGAAATTAAATTCAGTCAACATGGAAA
TGATTTTTTTCCCTTTTCCTACAGGGAATACCTCACCTTAACTAATAACT
CAGTATTTGGGTTTGAGACTCAAGTAAGGAAACAGATTATTCCCTCCAGA
TATCTCTAGCAACAAAACAATGAAAAGTTAACCATGTTTGATGTTTATCT
GTTGCTGCTTGATTGATTCCTTTTTAGCTAAAAAATCATAAAATACATAT
TTGATTTTGTTCTTCCCCCCCCCTTCTCAATTACTCCCAGACCCCTCTAT
TTTTTCTAGATACCTCCTACTTCTTTTCTTTCTATCTTCCCTTCTTTCCT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c13.g1 MSMg01no476_c13.g1 CHROMAT_FILE:
MSMg01no476_c13.g1 PHD_FILE: MSMg01no476_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:11 2005
         (274 letters)



>mm_chr12_94945549_94946222
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 266/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taataacaataataatagaaaagcatttctcatacccaaaactcccttctccagttgaca 60
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 470 taataataataataatagaaaagcatttctcagacccaaaactcccttctccagttgaca 411

                                                                       
Query: 61  actgtgaataaaactttggcttctatcctacatagttaagaaattaaattcagtcaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 actgtgaataaaactttggcttctatcctacatagttaagaaattaaattcagtcaacat 351

                                                                       
Query: 121 ggaaatgatttttttcccttttcctacagggaatacctcaccttaactaataactcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggaaatgatttttttcccttttcctacagggaatacctcaccttaactaataactcagta 291

                                                                       
Query: 181 tttgggtttgagactcaagtaaggaaacagattattccctccagatatctctagcaacaa 240
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 290 tttgggtttgagactcaagtaaggaaatagattattccctccagatatttctagcaacaa 231

                                         
Query: 241 aacaatgaaaagttaaccatgtttgatgtt 270
           ||||||||||||||||||||||||||||||
Sbjct: 230 aacaatgaaaagttaaccatgtttgatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)