BAC Information

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BAC

Clone NameMSMg01-476C17
Chromosome12 (Build37)
Map Location 67,034,179 - 67,034,524
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C17.T7 (MSMg01no476_c17.b1)MSMg01-476C17.TJ (MSMg01no476_c17.g1)
ACCAG557824AG557825
length773779
length of high quality
(start - end)
347 (38 - 384)368 (74 - 441)
definitionCHROMAT_FILE: MSMg01no476_c17.b1 PHD_FILE: MSMg01no476_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:11 2005CHROMAT_FILE: MSMg01no476_c17.g1 PHD_FILE: MSMg01no476_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTC
AAGCCTTTTCTCTATTATTTCCTCTATCAGGATCAGGGTATCTGGTCTTA
TGTTGAGGCTTTTGATCCACTTGGAGTTCATTTTTGTGCAGGGTGACTAG
AATGGATCTATTTGTGTTCTTCTATATGCAGCCATCCTGTTTGATCAGTA
CCATTGTTTGATAATACAATCAGTTTTTCTAGTTTGCTTTTCTGACTTCA
TAGGAAATTTCAGGTGTACATAAGTGTGTGAATGTAATGTCTTCAATTTT
ATGCTATTGATGAATATGTTTGCTTTATGCCAATACCATGCCTCATGCTG
TTTTTATTATTAGAGATCCACAGTATAATTTGATGTCAAGGATGATGATG
ACTCCCTCAGGTCTTTTATTATTTCTCTCTCTGCCTCTCTGTGTGCTTGC
GCGTGCTTCTGTATGATGTTGAAAATTATTCTTTCAAGATCTGTGAATGA
TTGCGCTGGAATTCTTGATGTGTATTGCACTGAATCTATATATTGCTTTT
CCTACATTGACTCTTTTTACTATATTGATCCCCTTGATTAATGATTACAT
GACACTTTCCTTTACTTTTGATATCTTTTTCCACCGTTCGACACTTTCAT
TCATTTCCCTTCCTTTCACGCTCCATTTACATTTCTTCTTTGAACATTTC
ACGTTACTTTACGGTTTTTTGTCACCAGCTCCGCTTTTCCTGACATTCCT
TTTCTATTTTGTCCCTTTGTTTT
TGATGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGCACAATTCCATGAAATAAAAAGTAAAATTAATTTTC
TGAGTCTGAATTTATAAATTTAGGAAACAACATCCACAATATGAAAAGGT
GAAGGCTTTATTTTCATACTGTAAGACCTTCTACATTCAACCTATAGGTT
TAATTGGTTTAGGGCTACAATTCCAACAGTGTATAGTGTGTGAACACAGG
AAATGAAATGTAATTTTCACAGTACATCAAAAGTTTCAGTTGGAATAAAA
ATATCCTATTTTCATTTTTGTTTTACATTGATAGACTCAAGTGAGAAGTG
TGTATTTCATGAACCTATTATGAAAGCTGTTATGATATTGATTCCATACT
ACACACACACACACACACATACGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTCCTTTTCTCCTCTTTCCCCCCTCTTCCTTCTATTTTCTCTTTTT
CCCTCTTCTTCTTCAATCCCTCTCCCCCTTTATGTTTTTTCCTTCTCCAC
TTTCACTTTTTCCACCCTTCCTCCTTCTTCTTTCCCTTTTTTTTTCTTTA
TTTTTCCTCCCTTCTTCTTTTCCCCCTTTCCTATTTTTCACCCCCCTATC
TTTTTCTACTTCTTTCCTCCTTAACTTTCCCATCACTACACTCCCCCTTT
CCTCTCTTCTCCCCCATTTTTCTTTTTTTTTTTCTTTCTATACCTCTCTT
TTCCTCCTTTTCTACCTTTTCTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c17.g1 MSMg01no476_c17.g1 CHROMAT_FILE:
MSMg01no476_c17.g1 PHD_FILE: MSMg01no476_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:11 2005
         (368 letters)



>mm_chr12_67033979_67034746
          Length = 768

 Score =  623 bits (322), Expect = 0.0
 Identities = 340/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaataaaaagtaaaattaattttctgagtctgaatttataaatttaggaaacaacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 546 atgaaataaaaagtaaaattaattttctgagtctgaatttataaatttagaaaacaacat 487

                                                                       
Query: 61  ccacaatatgaaaaggtgaaggctttattttcatactgtaagaccttctacattcaacct 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccataatatgaaaaggtgaaggctttattttcatactgtaagaccttctacattcaacct 427

                                                                       
Query: 121 ataggtttaattggtttagggctacaattccaacagtgtatagtgtgtgaacacaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataggtttaattggtttagggctacaattccaacagtgtatagtgtgtgaacacaggaaa 367

                                                                       
Query: 181 tgaaatgtaattttcacagtacatcaaaagtttcagttggaataaaaatatcctattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaaatgtaattttcacagtacatcaaaagtttcagttggaataaaaatatcctattttc 307

                                                                       
Query: 241 atttttgttttacattgatagactcaagtgagaagtgtgtatttcatgaacctattatga 300
           ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attttggaaatacattgatagactcaagtgagaagtgtgtatttcatgaacctattatga 247

                                                         
Query: 301 aagctgttatgatattgattccatactacacacacacacacacaca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagctgttatgatattgattccatactacacacacacacacacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)