BAC Information

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BAC

Clone NameMSMg01-476L16
Chromosome12 (Build37)
Map Location 13,945,036 - 13,945,274
singlet/doubletsinglet
Overlap genenone
Upstream geneMycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L16.T7 (MSMg01no476_l16.b1)MSMg01-476L16.TJ (MSMg01no476_l16.g1)
ACCAG558251AG558252
length853743
length of high quality
(start - end)
39 (79 - 117)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no476_l16.b1 PHD_FILE: MSMg01no476_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:55 2005CHROMAT_FILE: MSMg01no476_l16.g1 PHD_FILE: MSMg01no476_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTAAAATTGCGGCGCTAAACGACTCACAATCGGACCCGGACCGCGGAA
TTCTCCAGTTACAATCCATAGCAATGGNGCAGAGTGTGTGTGTGTTTGTG
TGTGTGTGTGTGTGTGCGCATCGCCACACTCTCGATTCTTTATCCCCCCT
TCTTCCCTTTCTCTTCCCAAGCCCTCTCCTTTCCCCCCAACTTTACCTTA
CCCCCCTCCCCCCTTACCAAATCCTTCTCCCCCTTTCTTTTCATCCCTCA
TTTCTTTTTTCCCTTTTCTTCCCCCTCCTCCTTTTACTTCCTTCCCCTCC
CATTCCATCCATATCCCCCACCCTTTTTCCTATTTTTCCCCCCCAACCCA
CCCCCCTTCTCCTACCCATCCCTTTCTCCCTTTTCCCCCTCTCCTTCTTT
TCCCCCCCCCTCCCACATTCTTCCCATCTCCTTCACCATCCCACCCCTAC
TTTCCCCCCTTTTTTCCTCTCCCTTCTTTTTTACCCCTCTACCTTAACCC
TACTCATTACCCATCCTTATCCACCACCCCGCCCTCTCCCCCTTTCCTTC
TTTTCTCCCCCCCTCTCACTCATCCCCTCCTCATAACCCTTAATATATTC
ACCAACTTTCTTCATTTTTTCCCCCCCCCCCCCCTTTTACACCCTTTCAT
TACACCTACCACCTCTCACTTCTTTCACACTCCCTCTTTCAACCTTTCCC
ATTAAACAAATCCCTCCCTCTCATCCACCCTATTTATCCCCCCCACCCTT
TTCTTTTTCCTACATCCTCCCCACATTTTCTCCCCTTCTTTCCTCTCACC
CCCCTCTCCCCTAATTACCCCCCCCCTTTTTCCCCCTCTTACCCCCCCCC
TAC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTTATGCAAATTGGGCATCC
CCAACACCCTGGCCCTGCCCAATAATATACACTCACCTTGATAACCCCTA
CTGACCCCCAAAGGTTGAAAAAGCCTTTGTCTCCCTAAAATGAGCTGTCT
TACCGAAGCTGCCTCCTGAGAGACTGCTCTCCCTGCACTCACCCCTACCT
GTTGGTCCTACCTAACTTCCCTACCCAGTGGTTTCTATCACAGAATTATC
ACACCACTATGGGCAGATATTTATAGCCTGAGCAGCAAACTGGCTGTCAC
TGTCTGGAACTTGCATCTTCCTTATCACTTGGCCATATACTCCTCAAGAG
TTAAAGTGATTACCGTTATTTTCGTGGCAACCAGGATAACTAACAAATGC
TAAATGCTTCAACATACTTATAGATGAATAGATGGATGGATGGATGGATG
GATGTATCCTCCCCCCCCTTTTTTTCCTTCTCCCTTCCTTCTTTTTTCTT
TCCTCTTTCCCTTTTTCCTTCCTCTTCCCCCTCCTCCCTCTCTTCTCTCT
CTTTTTCCTTTCCCCTTTTTTTCCTTTTTTTTTTTTTCCCCCTCTTCCCA
TTTTTTTTTTCTATATTTTCCCCTCCTCTTTCCTCTTTTTCCCTCCCTTT
TTCCATTTTTCCCTTCTTTTCCCCCTTTTTTCTCCCTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l16.g1 MSMg01no476_l16.g1 CHROMAT_FILE:
MSMg01no476_l16.g1 PHD_FILE: MSMg01no476_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:56 2005
         (241 letters)



>mm_chr12_13944835_13945475
          Length = 641

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccttatgcaaattgggcatccccaacaccctggccctgcccaataatatacactcacct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccttatgcaaattgggcatccccaacaccctggccctgcccaataatatacactcacct 381

                                                                       
Query: 62  tgataacccctactgacccccaaaggttgaaaaagcctttgtctccctaaaatgagctgt 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 tgataacccctactgacccccaaagtttgaaaaagcctttgtctccctaaaatgagctgt 321

                                                                       
Query: 122 cttaccgaagctgcctcctgagagactgctctccctgcactcacccctacctgttggtcc 181
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 cttaccaaagctgcctcctgagagactgctctccctgcactcacccctacctgctggtcc 261

                                                                      
Query: 182 tacctaacttccctacccagtggtttctatcacagaattatcacaccactatgggcaga 240
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tacctaatttccctacccagtggtttctatcacagaattatcacaccactatgggcaga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)