BAC Information

Click to search

BAC

Clone NameMSMg01-476P13
Chromosome12 (Build37)
Map Location 26,944,847 - 27,120,313
singlet/doubletdoublet
Overlap geneRnf144
Upstream geneLOC100042973, LOC100042974, LOC668726
Downstream geneRsad2, Tyki, LOC668731, 1700020D12Rik, Sox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P13.T7 (MSMg01no476_p13.b1)MSMg01-476P13.TJ (MSMg01no476_p13.g1)
ACCAG558435AG558436
length755750
length of high quality
(start - end)
249 (328 - 576)276 (326 - 601)
definitionCHROMAT_FILE: MSMg01no476_p13.b1 PHD_FILE: MSMg01no476_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:15 2005CHROMAT_FILE: MSMg01no476_p13.g1 PHD_FILE: MSMg01no476_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,944,847 - 26,945,095)(27,120,038 - 27,120,313)
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACCATCCGCNNGGA
ATCCCAAGTTAACACGACTCCTGNCACTTNNGNCAAAGCCAGAATGAATC
AGAGGAGGGAGAAAGTATACAATAAAGAATAGGAAGGCCAAAAACCGGTT
CCTAATAGAGACTATAGAACAGTAACTGTGGCACCTGGAAAGAGCCTCCT
AGTTCATCCTTCAGTGTTGCTGTCTGTGCAGAGGTGAGAGTCACATGACT
ATCTATCTTGTATAGATCCAAAGCAATGCTGCTTGTAGCCTTCAAGTGCT
ATAGAACATTCTATTTATTCCTTACTTGGCATGCATCTACTTAATAAGAA
TATGCCACTTTGTTATATGTTTGTTAACTACAAGAATGATCTCCCTTCAT
CCTGCATCACAATCTGTCCTACAAAGGTCCTTTCATTTGTGGTGAGTGGA
ACTTACAAGCACTTAAAGAGAGCCTGACATGTCTGGTCCTAGACCCCCAT
CTGTAATGGGTGGAGCTCTCATACTCCAGTGGCCAGGACAAGAATACTTT
AGAGGTCCGTGGTTTGAGAATGGAGATAAGGGAGAGGGAGGACCACTGCC
TCATACATGGGATACCATTCAAACTCCAGTCTACATGGTATCTAGCATGG
AATATTCTTTTTTATTTGAGAACTGGAACTAGAAGTGATCCGTACTGATA
CCAAGGAAACCTTCAGAGCATCTCAGAAAGAGTGGCGAGGTGCTCTGTGA
ATTCG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGNGCATCAATAATTAATGACGAC
AGGTTCTGCAGATTTCAGACACACACCCCCATCGTTAATTTCCCATGTTT
GTAGTGCCCTTAGAGCAACAGATGGTATGAAGAAGCCCTGATATTTGTGC
AATTATAATCATGGTCACTTTTTGTGAGACACATTCTGCCCTTGATTTAT
TATAGATTTGAGCTTCAAGGTTATTCAAAGGGCAGCTGCTAGAGGCATTG
GTCTGTGGCCACTGTATGGTTCGTCTCCAGAAAGGAGGATATTTGCTGTG
TAGACACAGTCTATGGGGGTGAATGGTGACTGTGTAGATGCAGTCTAGAA
AGGCTGAGCAGGAAGGGGGGGAATCTAGAGCCCGAGGAGAGGGTGAATGG
AGGAAGAAGCCAAGGTAGTATATTAGACCAGATGTCTGTGAAGGGAGGTG
GCCGGTGAAGACCACAGGGAGCCTTGGGAGTCAGAATCCTATGGAGAGAG
GGAGTTCGGGGAGTTGTATAACAGAGACTCGTGGTCCAGGGCAGCACTCT
CAGTCTTGGAGTAGGGTGACTCTGCATCTCTGTTCCTGTGTTGTTCAGCA
TATATTTTTATTTCTGACTACCTTAGTAGGTCAGACGCTTTAGTGGGTAC
CATAGAAGGACGCTATAACCCCTCCTCACCGGCCATTATATGTATGTGTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p13.b1 MSMg01no476_p13.b1 CHROMAT_FILE:
MSMg01no476_p13.b1 PHD_FILE: MSMg01no476_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:15 2005
         (249 letters)



>mm_chr12_26944647_26945295
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcatgcatctacttaataagaatatgccactttgttatatgtttgttaactacaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatgcatctacttaataagaatatgccactttgttatatgtttgttaactacaagaat 260

                                                                       
Query: 61  gatctcccttcatcctgcatcacaatctgtcctacaaaggtcctttcatttgtggtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctcccttcatcctgcatcacaatctgtcctacaaaggtcctttcatttgtggtgagt 320

                                                                       
Query: 121 ggaacttacaagcacttaaagagagcctgacatgtctggtcctagacccccatctgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacttacaagcacttaaagagagcctgacatgtctggtcctagacccccatctgtaat 380

                                                                       
Query: 181 gggtggagctctcatactccagtggccaggacaagaatactttagaggtccgtggtttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtggagctctcatactccagtggccaggacaagaatactttagaggtccgtggtttga 440

                    
Query: 241 gaatggaga 249
           |||||||||
Sbjct: 441 gaatggaga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_p13.g1 MSMg01no476_p13.g1 CHROMAT_FILE:
MSMg01no476_p13.g1 PHD_FILE: MSMg01no476_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:15 2005
         (276 letters)



>mm_chr12_27119838_27120513
          Length = 676

 Score =  534 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagaaaggaggatatttgctgtgtagacacagtctatgggggtgaatggtgactgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tccagaaaggaggatatttgctgtgtagacacagtctatgggggtgaatggtgactgtgt 417

                                                                       
Query: 61  agatgcagtctagaaaggctgagcaggaagggggggaatctagagcccgaggagagggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agatgcagtctagaaaggctgagcaggaagggggggaatctagagcccgaggagagggtg 357

                                                                       
Query: 121 aatggaggaagaagccaaggtagtatattagaccagatgtctgtgaagggaggtggccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatggaggaagaagccaaggtagtatattagaccagatgtctgtgaagggaggtggccgg 297

                                                                       
Query: 181 tgaagaccacagggagccttgggagtcagaatcctatggagagagggagttcggggagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaagaccacagggagccttgggagtcagaatcctatggagagagggagttcggggagtt 237

                                               
Query: 241 gtataacagagactcgtggtccagggcagcactctc 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtataacagagactcgtggtccagggcagcactctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)