BAC Information

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BAC

Clone NameMSMg01-477H16
Chromosome12 (Build37)
Map Location 36,945,774 - 36,946,129
singlet/doubletsinglet
Overlap genenone
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
Downstream geneSostdc1, 4930579E17Rik, LOC638858, Meox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477H16.T7 (MSMg01no477_h16.b1)MSMg01-477H16.TJ (MSMg01no477_h16.g1)
ACCAG558821AG558822
length757768
length of high quality
(start - end)
709 (33 - 741)355 (322 - 676)
definitionCHROMAT_FILE: MSMg01no477_h16.b1 PHD_FILE: MSMg01no477_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:56 2005CHROMAT_FILE: MSMg01no477_h16.g1 PHD_FILE: MSMg01no477_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCCCA
TACCTAAACATGATAAAATCAATCTACAGCAAACCAGTAGCCAACATCAA
AGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGAC
AAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAGTACTTGAAGTCGTA
GCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAATTTGGAAA
AGATGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAA
GTGACCCTAAAAATTCCACCAGAGAACTCTTAAACCTGATAAACAGCTTC
GGTAAAGTAGCTGGATATAAAATTAACTCAAACAAATCAATGTCCTTTCT
CTACACAAAGAATAAACAGGCTGAGAAAGAAATTGGGGAAACAACACCCT
TTTCAATAGTCACAAATAATATAAAATATCTTGGCGAGACTCTAACTAAG
GAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAAT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCTTGCTCATGGATTGGCA
GGATCAACATTGTAAAAATGGTTATCTTGCCAAAAGGAATCTACAGATTC
AAAGTAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAAAAAG
AGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTCGGATAGCAAAAA
CTCTTCT
AATGCAGTGGGAGGCCTGGNGGCCGCCTGTTCGAAACAGGGGGGTGAACT
ATAGAAGTACAAAAAAAAGTCCAGGCACTGGGACCTCACACTCTGCTGCT
GACTTCAAGGCCTCCCTGAAGGTCCCAGCCCCTCCGTCTCATGGGCAATT
GCTAGCAATTTTTTCTCATAAATGGTAGAGGAGGGTGCAATGCTGAAATG
GGTTGGAGCCTTAGCCCTGGGCTATTTTCTCACCCTCAGAAGAACTTGAG
ACTGAAGTAAGTAACACTTCAGATTTTTACATGGTTTTCTTACTTGAAAA
GAGTTATGACTTTTGGTAGTGCATAGTTTTCTCATTTTAATGAGCGGAGT
CTAGTCTCAGATGGCAAATGAGGCTCCTAAGAACCTAGCATGTGGACATC
ACTGCCCAAACGTTAGGCATCTCCTGAGTGCATTTCCAGAAAGCACTTTC
TTTTTAACTGAATTCAAGGAAATGACCCCATGCCAAGCTTCTCAGGTGGG
ACATGTTACTGTAACTTGAATGATGTCATCACAGTTTTAAGTAGAGGTGA
TTTTTAACTGTCACAACAAGTAATAAGATGGATGTCTTATTGCCAGACTT
GCCTTTGAAGAGTGTGGGCATTTCATCCCTAATCCTGACTGGCCAGGGTA
CTTGCGTGCTTAGATGTACGTCTGACAAGTAGGAAGGGGTTGGATTTCAG
GTACCTTCAGTTCTGAACANGCATCTTGATTCAGTGTACAGCTCTGCTTC
ATTAGAGGTCAAACTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_h16.g1 MSMg01no477_h16.g1 CHROMAT_FILE:
MSMg01no477_h16.g1 PHD_FILE: MSMg01no477_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:56 2005
         (355 letters)



>mm_chr12_36945574_36946329
          Length = 756

 Score =  665 bits (344), Expect = 0.0
 Identities = 353/356 (99%), Gaps = 1/356 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagttttctcattttaatgagcggagtctagtctcagatggcaaatgaggctcctaag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagttttctcattttaatgagtggagtctagtctcagatggcaaatgaggctcctaag 260

                                                                       
Query: 61  aacctagcatgtggacatcactgcccaaacgttaggcatctcctgagtgcatttccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctagcatgtggacatcactgcccaaacgttaggcatctcctgagtgcatttccagaa 320

                                                                       
Query: 121 agcactttctttttaactgaattcaaggaaatgaccccatgccaagcttctcaggtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcactttctttttaactgaattcaaggaaatgaccccatgccaagcttctcaggtggga 380

                                                                       
Query: 181 catgttactgtaacttgaatgatgtcatcacagttttaagtagaggtgat-ttttaactg 239
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 catgttactgtaatttgaatgatgtcatcacagttttaagtagaggtgatgttttaactg 440

                                                                       
Query: 240 tcacaacaagtaataagatggatgtcttattgccagacttgcctttgaagagtgtgggca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacaacaagtaataagatggatgtcttattgccagacttgcctttgaagagtgtgggca 500

                                                                   
Query: 300 tttcatccctaatcctgactggccagggtacttgcgtgcttagatgtacgtctgac 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcatccctaatcctgactggccagggtacttgcgtgcttagatgtacgtctgac 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 756
Length adjustment: 9
Effective length of query: 346
Effective length of database: 747
Effective search space:   258462
Effective search space used:   258462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)