Query= MSMg01no478_p24.b1 MSMg01no478_p24.b1 CHROMAT_FILE:
MSMg01no478_p24.b1 PHD_FILE: MSMg01no478_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:50 2005
(239 letters)
>mm_chr12_71111513_71112151
Length = 639
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1 cagcttgtagcagcaggtaattcacacagtcttgacttaaccctaggaggccctgcttgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 439 cagcttgtagcagcaggtaattcacacagtcttgacttaaccttaggaggccctgcttgg 380
Query: 61 catccaggatgcctcagaagtggagccacttgaccatcttcatctgagaggttcagactc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catccaggatgcctcggaagtggagccacttgaccatcttcatctgagaggttcagactc 320
Query: 121 taactgagctgctcataaatgacgacacagatgataaaagaccccaaaagtaaaccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taactgagctgctcataaatgacgacacagatgataaaagaccccaaaagtaaaccaaag 260
Query: 181 cgcgctgttaatatgccaagccccgaaatgtgcaggggggatgttggctgacctacgcc 239
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 259 cgcgctgttaatatgccaagccccggaatgtgcaggggggatgttggctgacctacgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_p24.g1 MSMg01no478_p24.g1 CHROMAT_FILE:
MSMg01no478_p24.g1 PHD_FILE: MSMg01no478_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:50 2005
(607 letters)
>mm_chr12_70956919_70957925
Length = 1007
Score = 1042 bits (539), Expect = 0.0
Identities = 586/607 (96%), Gaps = 9/607 (1%)
Strand = Plus / Plus
Query: 1 ctagtttttaaacccacctctggggacaagaaagaataatgttagagactaagtctacac 60
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagttttgaaacccgtctctggggacaagaaagaataatgttagagactaagtctacac 260
Query: 61 aactcacttcccttgttagctcaaaatgtcaaacaacaatcataaaaggccaaagtaggc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcacttcccttgttaactcaaaatgtcaaacaacaatcataaaaggccaaagtaggc 320
Query: 121 tttatgatgtagagtcgcagtaacagtaccgtgatagatatcttgaagtgatccgccacc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgatgtagagtcgcagtaacagtaccgtgatagatatcttgaagtgatccgccacc 380
Query: 181 gcagtactccatgcaaatccacagcttctccctactaatatgagagagaaagagaattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtactccatgcaaatccacagcttctccctactaatatgagagagaaagagaattaa 440
Query: 241 atgagtgtgtacttccagctactgaaatgcatactctataggcccacggctctcactctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagtgtgtacttccagctactgaaatgcatactctataggcccacggctctcactctc 500
Query: 301 atactgcactgggcttcggggtggtccgcagagagcaacaggaaactggcagagcaatcg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagtgcactgggcttcggggtggtccgcagagagcaacaggaaactggcagagcaatcg 560
Query: 361 ttcctaggcacacatcagttcagatttctcagtttgagagggttaggatgtgatctgttc 420
|||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ttcctaggcacatatcagttcagatttctcagtttgaga---------tgtgatctgttc 611
Query: 421 tccattatcatcactcacaatgctccagtaaggctcccagacaaggcacgatcatataca 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 612 tccattatcatcactcacaatgctccagtaaggctcccagacatggcacgatcacataca 671
Query: 481 cagaggcggtaatatttatagagcagggaagatggcaagaaaaccctaccagagttagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cagaggcggtaatatttatagagcagggaagatggcaagaaaaccctaccagagttagaa 731
Query: 541 ttttgagcaatgttttaaaaatgcacacatacgacggcatttacacaaaaagaagatggt 600
||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct: 732 ttttgagcaatgttttaaaaatgcacacacacgacgacatttacacaagaagaagatggt 791
Query: 601 aggaaag 607
|||||||
Sbjct: 792 aggaaag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
