Query= MSMg01no479_d01.b1 MSMg01no479_d01.b1 CHROMAT_FILE:
MSMg01no479_d01.b1 PHD_FILE: MSMg01no479_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:06 2005
(669 letters)
>mm_chr12_78030422_78031490
Length = 1069
Score = 1189 bits (615), Expect = 0.0
Identities = 657/673 (97%), Gaps = 4/673 (0%)
Strand = Plus / Plus
Query: 1 cgcagagatactagaaaactgatacccacactgaccacgcgtggaccttccccttcacca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 cgcagagatactagaaaactgatacccacactgaccacccgtggaccttccccttcacca 256
Query: 61 tttactggagccaatacaacttagcagttatctgcatagcattgtaaacagagctttggg 120
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttactggagacaatacaacgtagcagttatctgcatagcattgtaaacagagctttggg 316
Query: 121 caggagggcagtgctggagggcaaactctgggctaggcaagcactttctgaccaagcttt 180
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 317 caggagggcagtgttggagagcaaactctgggctaggcaagcactttctgaccaagctgt 376
Query: 181 atccccagcctcaagagaataaagtacacaggaggacttacggaggctctgtgtaaatac 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 377 atccccagcctcaagagaataaagtacacaggaggacttatggaggctctgtgtaaatac 436
Query: 241 tgtgccatctcactgagagatcagagcacttgtagctttgggtacctatgaggggttcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgtgccatctcactgagagatcagagcacttgtagctttgggtacctatgaggggttcag 496
Query: 301 agcccatctccagtcctgaggaatggctgtttctatcagcgtagactccagaatactccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcccatctccagtcctgaggaatggctgtttctatcagcgtagactccagaatactccc 556
Query: 361 cagttatgttctaatactgtagcctg----ttttgctgctcaaattgtctctactttggc 416
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 cagttatgttctaataccgtagcctgcctgttttgctgctcaaattgtctctactttggc 616
Query: 417 tactagaactctttaatggctgtttcctttacatatcaatagcaacattttatcatcttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tactagaactctttaatggctgtttcctttacatatcaatagcaacattttatcatcttt 676
Query: 477 ttctctcaaaacacattgccagagagtagtagttgactttgggttctgcatatttttggg 536
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 677 ttctctcaaaacacattgctagagagtagtagttgacactgggttctgcatatttttggg 736
Query: 537 ttcagtacaccgttctcttaaccttcgctcacattaacttcctcccataataggaactct 596
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttcagtacactgttctcttaaccttcgctcacattaacttcctcccataataggaactct 796
Query: 597 gaatcgttatcttgggtgtgattcttccttgctacctctgtacctgtgatggcctagtct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gaatcgttatcttgggtgtgattcttccttgctacctctgtacctgtgatggcctagtct 856
Query: 657 gatgggacaaagg 669
|||||||||||||
Sbjct: 857 gatgggacaaagg 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_d01.g1 MSMg01no479_d01.g1 CHROMAT_FILE:
MSMg01no479_d01.g1 PHD_FILE: MSMg01no479_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:06 2005
(522 letters)
>mm_chr12_78177497_78178418
Length = 922
Score = 955 bits (494), Expect = 0.0
Identities = 517/528 (97%), Gaps = 7/528 (1%)
Strand = Plus / Minus
Query: 1 cacgagggggaaaacctagtccttggttggtttgcttcgtctttgcgc------tttttt 54
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 910 cacgagggggaaaacctagtccttggttggtttgcttcgtctttgcgctttttttttttt 851
Query: 55 tttttttttttttgagactaggtttcgtgtaacccaggttggccttgaactcccatatgt 114
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 850 tttttttttttttgagactaggtctcgtgtaacccaggttggccttgaactcccatatgt 791
Query: 115 ggtagaggatgatcttgaccttgaattcccgatcctcctgaattcagctccccagtgtga 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 790 ggtagaggatgatcttgaccttgaattcccgatcctcctgaattcaactccccagtgtga 731
Query: 175 gattacaaaacatacagctagcttatacagtgctggggactgaacccaaggcaatactag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gattacaaaacatacagctagcttatacagtgctggggactgaacccaaggcaatactag 671
Query: 235 ctaaacattctcttaattgaactacctttccagcaaaatttatctttttttacttggctc 294
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 670 ctaaacattctcttaattgaactacctttccagcaaaattgatctttttttacttggctc 611
Query: 295 ttagccctctctggtttgtttgggcttgcagtttgagggtgctgtctgcaggggtgcaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttagccctctctggtttgtttgggcttgcagtttgagggtgctgtctgcaggggtgcaga 551
Query: 355 agcaagagacacacacagcgtaagtagctcaggggcagagcgaagggaatggcgctgctg 414
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 550 agcaagagacacacacagcgtaagtagctcaggagcagagcgaagggaatggcgctgctg 491
Query: 415 ctccatctggaacctcagcctgttaaggaggagtcttctgcctcagttaacctaatctag 474
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 ctccatctggaacctcagcctgttaaggaggagtcttctgcctcagttaa-ctaatctag 432
Query: 475 gaactcccttacaggcatgcccacaagtttgtctagtaagtgactcta 522
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaactcccttacaggcatgcccacaagtttgtctagtaagtgactcta 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
