BAC Information

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BAC

Clone NameMSMg01-480B15
Chromosome12 (Build37)
Map Location 98,791,600 - 98,791,877
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480B15.T7 (MSMg01no480_b15.b1)MSMg01-480B15.TJ (MSMg01no480_b15.g1)
ACCAG560823AG560824
length1,009723
length of high quality
(start - end)
---282 (329 - 610)
definitionCHROMAT_FILE: MSMg01no480_b15.b1 PHD_FILE: MSMg01no480_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005CHROMAT_FILE: MSMg01no480_b15.g1 PHD_FILE: MSMg01no480_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTTGGTTGNGTGGGGCNNNTATGCCTAGGAACCTTCACTCCTCAGAA
GGCGGGGAACACNGGAGTTCTCTCCCCCCGCGGAGGGGGGGTGGGCGGCT
GTATCACGCGTTGTTGTTGTGGTGTGATCCCGCTCCCCACCGCCTATTCC
GTACCCCGCGCGTAGAGACCGCTATTAACGCCGGTACGAGTCGCAGATGG
CGGGCGAAACTGAACAATGTATGTAATAATATAGGCTTACATCTACACCG
CCTCTATGTTCCCCCACCACCCCTTAACTCCCCCTCCCACCATGAATATA
TTTCAAGACATAAATGATAAAACACAAATACCCCCAGAAGTCTGAGAGTC
GAGTATGCTCTGTACCGCTATCTATAACGCCGAACATTACCCCACCCATA
TATACACACTGCCATATCGAGTCTCNACAAACTTATTACCAATTCTAATA
TCTCCTGCTACCTATAACAGGATGATGCAGTGCTTCACAGCAAAGCTGAC
CTGTTAAGCTAGTACCAATTCTATACCATACTCTCCCGCATATATATTAT
TATATTCTTCTAGCGAACCCAGCTCTTAGTCTGACCGGTGATGTCTCGTA
ATTATCTCTCCTCCGCATAAGGACACTTATACAGCTAGTAGTTCGTCGCA
CTGAGCACACGTTTTTACACGTAGCCGGGGCAGTATGTGCGCGTCGCTAC
TATAAGGCAGGAGTACCACACATGTATATATGTATCACATATTAATATAT
TAAGATACGTAACCACTCCTTATCGCCACAATATTTTTATATATCCTCCC
GCCGCTCCGACGACAGAGATGTATCACCTATATAGTGTCATCGCCACGTC
ACGCGGAGACATACTCGTGACCGCTTTCTCGCTNGCAGCGCACATTTTTC
TGTGAGCCTGTGGCAGATGTGTGCTTGTGACGATTACACCATAGATCTCT
TATAGTGTGGTGTGGAGGGGCAGTACGCTAGCGTACGTTCAGCGATTTGC
GGCGAAGAN
TTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATAGGAGG
TGAACTATAGAAGGTTACANAAAATTCGCCTCCTGTTGAGTGGGCCTTAA
GTCCAATTAGAAAGATGTTGGTTACCAACAAGACCTGTATGCCACCATTA
TACCATTGCGGATATCTTGCTGGTCCATTGTGGTTCACACACTTTTCTGC
TGGGTACAAATACAATTGTTCCTCTTCCTTGGCAAGTTGATACCACATTC
CCATAAGTGAGCCAGTTTGAAGAGTAGAATGTTTTATGTCAGATATACTT
TTATTTCTCCAAATCCTATGNCTAATATGTATGGTATCCTCAGCAATAAG
GAAATTACTTTAATATTCTTGGAGGCAACCAAGGGAAATAGCAATAGCCT
GTTTTTGGAGTCACTTCTACTTCCCTGACCAACAATGTGAGCAGATAAAT
ATTCATGCTACTGCAATTTTTGTTAGGCTATGGTTCTTGGGGGGGGGGTT
ATTGTCCATGGATTTTTCAAAGGTTCTTAGTGTTATTCATCCCTCTTTCC
CACCATCTCTTCAGTTACAGTTCCTCTTTGTAGCTCCTGTGTTCTGCTAG
GGCACTGTCAAGAGCCAGCTCCTTTTCTTACTTTCCTGATATTTTGCATT
TACTCTGCGTTAATATACTCAAATCCTAAAGATTCCGAGGTTGGGAACCT
CCAATTAAGAGAGTATCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_b15.g1 MSMg01no480_b15.g1 CHROMAT_FILE:
MSMg01no480_b15.g1 PHD_FILE: MSMg01no480_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:18 2005
         (282 letters)



>mm_chr12_98791397_98792078
          Length = 682

 Score =  482 bits (249), Expect = e-140
 Identities = 272/281 (96%), Gaps = 3/281 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatggtatcctcagcaataaggaaattactttaatattcttggaggcaaccaagggaaa 60
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 204 gtatggtatcttcagcaataaggaaattactttaatgttcttggaggcaaccaagggaag 263

                                                                       
Query: 61  tagcaatagcctgtttttggagtcacttctacttccctgaccaacaatgtgagcagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagcaatagcctgtttttggagtcacttctacttccctgaccaacaatgtgagcagataa 323

                                                                       
Query: 121 atattcatgctactgcaatttttgttaggctatggttcttggggggggggttattgtcca 180
           ||||||||||||||||||||||||||||||||||||||||||| | |   ||||||||||
Sbjct: 324 atattcatgctactgcaatttttgttaggctatggttcttgggagag---ttattgtcca 380

                                                                       
Query: 181 tggatttttcaaaggttcttagtgttattcatccctctttcccaccatctcttcagttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatttttcaaaggttcttagtgttattcatccctctttcccaccatctcttcagttac 440

                                                    
Query: 241 agttcctctttgtagctcctgtgttctgctagggcactgtc 281
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agttcctctttgtagctcctgtgttctgctagtgcactgtc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)