Query= MSMg01no480_m05.b1 MSMg01no480_m05.b1 CHROMAT_FILE:
MSMg01no480_m05.b1 PHD_FILE: MSMg01no480_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:10 2005
(238 letters)
>mm_chr12_40929787_40930425
Length = 639
Score = 418 bits (216), Expect = e-121
Identities = 232/238 (97%), Gaps = 3/238 (1%)
Strand = Plus / Plus
Query: 1 atttgcttcgagcttttgttcgagctttgaaagctgcagacttatataaatgctgaaata 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atttgcttcgagcttttgttcgagctttgaaagctgcagagttatataaatgctgaaata 260
Query: 61 gaaaagaaaaatatacatggatcagtaagacaagatattcttataaacaaggggaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaagaaaaatatacatggatcagtaagacaagatattcttataaacaaggggaaacaa 320
Query: 121 actagggggaaagataaaaacctctaaggaactagag--gtaacaggcacacttcatcct 178
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 321 actagggggaaagataaaaacctctaaggaactagagaggtaacaggcacacatcatcct 380
Query: 179 acaataaagtgcatgaaaattttgctacatagcgtttacctcaataaaaaccaaacac 236
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 381 acaataaagtgcatgaaaattttgctacata-catttacctcaataaaaaccaaacac 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space: 144270
Effective search space used: 144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no480_m05.g1 MSMg01no480_m05.g1 CHROMAT_FILE:
MSMg01no480_m05.g1 PHD_FILE: MSMg01no480_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:10 2005
(419 letters)
>mm_chr12_41116833_41117651
Length = 819
Score = 803 bits (415), Expect = 0.0
Identities = 418/419 (99%)
Strand = Plus / Minus
Query: 1 aaatatgccttagtattctgaatatgactgcctcttcactatttacaaaagctttaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaatatgccttagtattctgaatatgactgcctcttcactatttacaaaagctttaaaag 560
Query: 61 acgttttagaactgtatctgtgttaaagcagtccaaatcctaacaggtagcttgaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acgttttagaactgtatctgtgttaaagcagtccaaatcctaacaggtagcttgaaaaaa 500
Query: 121 agggctttgtttaaaacgttaggaagtaaggccagagcacttgctgagcagctttgcgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agggctttgtttaaaacgttaggaagtaaggccagagcacttgctgagcagctttgcgtt 440
Query: 181 ggctgggctctaccttccttgttctacctttagtgcttgtgacagtttccattgtgttga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggctgggctctacctaccttgttctacctttagtgcttgtgacagtttccattgtgttga 380
Query: 241 tatggccatgagcagccagccttctggaaaacatgggttcctggagagcaatccagctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatggccatgagcagccagccttctggaaaacatgggttcctggagagcaatccagctca 320
Query: 301 gatattttcctttgccccttgggtcttgcatagcctttccctgaaagtgcagggttttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gatattttcctttgccccttgggtcttgcatagcctttccctgaaagtgcagggttttag 260
Query: 361 agaaaaatttactacattgtggtaatatactgaatattaattgtaactttaagttttta 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaaaaatttactacattgtggtaatatactgaatattaattgtaactttaagttttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
