Query= MSMg01no481_b11.b1 MSMg01no481_b11.b1 CHROMAT_FILE:
MSMg01no481_b11.b1 PHD_FILE: MSMg01no481_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:36 2005
(663 letters)
>mm_chr12_98697680_98698742
Length = 1063
Score = 965 bits (499), Expect = 0.0
Identities = 544/563 (96%), Gaps = 7/563 (1%)
Strand = Plus / Minus
Query: 108 atttaataacctattaaaccaacaaatttacttctgtagaaaagaagttataagaactag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 atttaataacctattaaaccaacaaatttacttctgtagaaaagaagttataagaactag 1004
Query: 168 taagtgatgaatcttattaaacttttaagaaatatacaaagaacttgtattctttgctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 taagtgatgaatcttattaaacttttaagaaatatacaaagaacttgtattctttgctta 944
Query: 228 tttttacaaaacagcattaatgatttataattctaatgatattttattctattcaaatcc 287
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 943 tttttacaaaacagcattaatgagctataattctaatgatattttattctattcaaatcc 884
Query: 288 caatttcagta-------cttaatagtggacataaagcaaaatacacatggtttaagtct 340
||||||||||| | |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 883 caatttcagtatgcataccctaatagtggatataaagcaagatacacatggtttaagtct 824
Query: 341 cccctttggaatatcttaatgtctgcataaatcatgagtctgttaacacactgtggcaat 400
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 823 cccctttggaatatcttaatgtctgcataaatcatgagtctgttaacacactctggcaat 764
Query: 401 ccacactttcccatgcctattttccattgacctgtctactttcagaggcagtcacagttc 460
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ccacactttcccatgactattttccattgacctgtctactttcagaggcagtcacagttc 704
Query: 461 tcttcctagaccgatttgaagtgtaaaaattgggagcttagcatattgtgagtgtgaaga 520
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcttcctagactgatttgaagtgtaaaaattgggagcttagcatattgtgagtgtgaaga 644
Query: 521 aaatgttgaaaagttcgtatgtgttttctctttttgctttatatttcaggagtctctctt 580
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaatgttgaaaagttcgtctgtgttttctctttttgctttatatttcaggagtctctctt 584
Query: 581 catagccgattatatcgaaaaagagagatagagaatgaacatggtttaatttgacagctt 640
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 catagccgattatgttgaaaaagagagatagagaatgaacatggtttaatttgacagctt 524
Query: 641 ccggctgcatattgcaaatcagg 663
| |||||||||||||||||||||
Sbjct: 523 caggctgcatattgcaaatcagg 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_b11.g1 MSMg01no481_b11.g1 CHROMAT_FILE:
MSMg01no481_b11.g1 PHD_FILE: MSMg01no481_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:36 2005
(658 letters)
>mm_chr12_98578760_98579818
Length = 1059
Score = 1228 bits (635), Expect = 0.0
Identities = 653/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Plus
Query: 1 tttactgaattttggagaaagttaaattcggctacaaaggattacaataactgccattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactgaattttggagaaagttaaattcggctacaaaggattacaataactgccattct 260
Query: 61 tcacattgcagaggtttcctgtaatttttgttttcaaaagttgattccattccatccaca 120
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcacattgccgaggtttcctgtaatttttgttttaaaaagttgattccattccatccaca 320
Query: 121 aatgtagatgtaatctaatgatttatgcatggattatgaagctgggtgtcatacttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtagatgtaatctaatgatttatgcatggattatgaagctgggtgtcatacttattt 380
Query: 181 gactctttcagcctagagtaaagataaatggtgacatttatcaaaaaataattgcacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactctttcagcctagagtaaagataaatggtgacatttatcaaaaaataattgcacaaa 440
Query: 241 ggtcttgttgcagagcaatggaaaatcatgcctcggcaaatgcaatatatgtttaaaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcttgttgcagagcaatggaaaatcatgcctcggcaaatgcaatatatgtttaaaggg 500
Query: 301 aaaaaatactacttaagagtagttaatggaatcttctggtatgagcttggctgaaagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaatactacttaagagtagttaatggaatcttctggtatgagcttggctgaaagttt 560
Query: 361 tttttt-cctttgtaaggttttaacataataggaaaacttctacctctgccactccacag 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttcctttgtaaggttttaacataataggaaaacttctacctctgccactccacag 620
Query: 420 aaaatgtggctgtgagaaatgaggggatccttaatgcttcatgtggataggaagtatgct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatgtggctgtgagaaatgaggggatccttaatgcttcatgtggataggaagtatgct 680
Query: 480 gctcagaaacctatttgattttttcccaagtaaacattgggaagcgggtaaatccaatct 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcagaaacctacttgattttttcccaagtaaacattgggaagcgggtaaatccaatct 740
Query: 540 gtaataaacaccttaacttagtgagtggtgataagtatgttcatctactatgtctcgttc 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 741 gtaataaacaccttaacttagtgagtggtgataagtatgttcatctaatatgtctcattc 800
Query: 600 tttatgttacgctcatctggataaaagcaaaatcatctataactaatggcttttcttgt 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttatgttacgctcatctggataaaagcaaaatcatctataactaatggcttttcttgt 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
