Query= MSMg01no482_g07.b1 MSMg01no482_g07.b1 CHROMAT_FILE:
MSMg01no482_g07.b1 PHD_FILE: MSMg01no482_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(677 letters)
>mm_chr3_120926417_120927493
Length = 1077
Score = 861 bits (445), Expect = 0.0
Identities = 473/487 (97%), Gaps = 8/487 (1%)
Strand = Plus / Minus
Query: 191 tgtaagaattaggaagatactgccattttgtttagccttggcaaaaatatccaggggctg 250
|||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tgtaaggattaggaaggtactgtcattttgtttagccttggcaaaaatatccaggggctg 1018
Query: 251 ggagctcttgtccagtaagcatcggcacctgagcgtggaccacggcctctgtaaataaca 310
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ggagctcttgtccagtaagcagcggcacctgagcgtggaccacggcctctgtaaataaca 958
Query: 311 tggactcggtagcttatccttgttattcctgcccttgggaagggagccgggtacatactc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tggactcggtagcttatccttgttattcctgcccttgggaagggagccgggtacatactc 898
Query: 371 tggccagctagttagctgaatagggaagttccagaccaacaaaagacataagagggactg 430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tagccagctagttagctgaatagggaagttccagaccaacaaaagacataagagggactg 838
Query: 431 tgactgaagaaggcctccaagactgacttctaacatgtgtggacacagacacctgtacac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgactgaagaaggcctccaagactgacttctaacatgtgtggacacagacacctgtacac 778
Query: 491 acacatgcatgtgcatgcaaacataaatgcatcataaattttatctacaaagtgatgcta 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 777 acacatgcatgtgcatgcaaacataaatgcatcataaattttatctacaaagcgatgcta 718
Query: 551 tatagatgccacttagtcttagtctatggttattgactaggttttgctaggaagcaaaat 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tatagatgccacttagtcttagtctatggttattgactaggttttgctaggaagcaaaat 658
Query: 611 ccttagcttaaaaacatttgtttttggagacaagagttttcactgtgtaaccttgactct 670
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 657 ccttagcttaaaaacatttgtttttggag--------tttcactgtgtaaccttgactct 606
Query: 671 cctggaa 677
|||||||
Sbjct: 605 cctggaa 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_g07.g1 MSMg01no482_g07.g1 CHROMAT_FILE:
MSMg01no482_g07.g1 PHD_FILE: MSMg01no482_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:17 2005
(650 letters)
>mm_chr12_56709050_56710098
Length = 1049
Score = 1197 bits (619), Expect = 0.0
Identities = 637/643 (99%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 8 gttaaagagttgactgataactttattacctacatgtataatatgcacatatagatacat 67
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1049 gttaaagagttgactgataactttattacctacatgtataatatgtacatatagatacat 990
Query: 68 ctattcatatacatacaccactttttataattacttttagaaaaatctatgattcagatt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ctattcatatacatacaccactttttataattacttttagaaaaatctatgattcagatt 930
Query: 128 tttatctagagaaaaattataaaaattatttcattataaaaaataataaattctaaaata 187
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 929 tttatctagagaaaaattataaaaattatttcattataaaaagtaataaattctaaaata 870
Query: 188 taattattcaaataaattatgccatcaaaatcagaaaaaaaaacttagggtatctgtgaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 taattattcaaataaattatgccatcaaaatcagaaaaaaaaacttagggtatctgtgaa 810
Query: 248 gacatagagtggcacccagctcccctcattctaacctcagtcttgctgttaatcccacgc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gacatagagtggcacccagctcccctcattctaacctcagtcttgctgttaatcccacgc 750
Query: 308 taggagacacatgtgtaaatagcttaggctgtgtggctgtccgtcagcctttctgaatct 367
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 749 taggagacacatgtgtaaataggttaggctgtgtggctgtccgtcagcctttctgaatct 690
Query: 368 ttaaggaggacatgtcagcagaattagacaatggtttaggtgctttaagctcaatgtctt 427
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 689 ttaaggaggacatgtcagcagaattagacaatggtttaggtactttaagctcaatgtctt 630
Query: 428 tttaatgctattttaaactttcctccaagacattgaaataatctaaaataaaatgtttcc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttaatgctattttaaactttcctccaagacattgaaataatctaaaataaaatgtttcc 570
Query: 488 gctccttcagaagatacttatataaaaaacctaaacattacttataagtgccaagatgaa 547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 gctccttcagaagatacttatat-aaaaacctaaacattacttataagtgccaagatgaa 511
Query: 548 aatgagttttcttgagtatattatcacaatctataaatttgtttgatacttttaaaaatc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatgagttttcttgagtatattatcacaatctataaatttgtttgatacttttaaaaatc 451
Query: 608 agattcctgctcaaatctattcagtagattagtctgagtatat 650
||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 450 agattcctgctcaaatctattcagtagattagtctgaatatat 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
