BAC Information

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BAC

Clone NameMSMg01-483J13
Chromosome12 (Build37)
Map Location 28,506,979 - 28,683,651
singlet/doubletdoublet
Overlap geneLOC669327
Upstream geneSox11, LOC100043009
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483J13.T7 (MSMg01no483_j13.b1)MSMg01-483J13.TJ (MSMg01no483_j13.g1)
ACCAG563488AG563489
length729746
length of high quality
(start - end)		308 (422 - 729)620 (80 - 699)
definitionCHROMAT_FILE: MSMg01no483_j13.b1 PHD_FILE: MSMg01no483_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:51 2005CHROMAT_FILE: MSMg01no483_j13.g1 PHD_FILE: MSMg01no483_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,506,979 - 28,507,286)(28,683,032 - 28,683,651)
sequence
NNNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAG
CCGCGGAATTCCATGTTTACATAACAGCTGGTGTCCACAACTTTTTGTGA
GTAACTTTATTGGCTCAGTGCAAATTCCCAGAGAATGAATTCATCTTTTT
TTTTTTTTTCTTGCTGAACTGTGTTCCACGGTATAGCCATTCTGCACCTG
TTTGAAAATACCTGAGTTATTTCCTTTCATGAGCGGTTAGGTGGACAGTC
CCCATGAACCTATCAGTGTGTGTGCACGGGTACTTGTGTGAACATACCTT
CTCCATGGGGGGGGGCGATGATGTCCTAAGCATGTGGTTACTGGGAAGTA
TTATAAATGAATGAAAAAATCAAGGAAAAGAAAATGAAAACAGCAAGGCC
AAGTCACCACAGAAGGGCCCGGGGCTTACTGAAACCTACTCAATGCTACT
CTCAGTTATCCCTTCTCTACCTTGAGTAGCTGCTGATTTTCACTACAGTT
TCAGCAATTTACCTTGTTGTTTTCTTTTTATCCTCAAGATGAACATTTGA
GCATCATTGATGATATTTTTATGGTGGAGGAAATCTGTGCATGTGACAAG
AAACTTTGATCACAGGCTTGGAATACAGGGTCAGCCCGTTTAGCTGGCTC
TCCATAGCCCAACCCTCATACCCAACAAGATGCTCTGCTGAGATTCATCC
TAAAGTTTCAGGAGTGAGGGCCAATTAGA

NNNNNTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGTCACGTGTGATGAGT
GTGTGTGCTCTTACCCTCTATATCTCACAGACAATCCACTGCATGCGTGT
TTCATTTGTACAGTGGCTGTGAGTTTGCTGAAGATAAGCCAGTGGTATCT
ACACCATCAGCCTTCACAGATACTCTAAAGTAAGGGCCTGACTCAAGTCA
GGTACACAGTCAGGAACCTTGGGTCCTCCTCACTCTTGATGTTGTTGGAA
CAGGCAGTTCTGTCTTTAAAGTCTTAACATGGTGGTGTCCAGTCTGGGCA
AGTGGCTACATGTTTCAGTCTAAAAATAGTTTCCTCTTCCATCATTTCTG
AGTTTGTTCTTCTGTTAGCCCTAGTAGGTTTGTTTTTAGATTTAATTCAA
TTCTAAAATAGTTACTGTATCAGTAACAGCTTAGGAATGGTGGCAGGTTA
GGAAATAACTACCATGGGGTGCAGCTGCAATCCGAGAAGCCTGGAATGGA
GGCCCCATTTATAAGAATCTCAACCTCCAGGGGCAGGTAAGGAAGAAAAG
GAGACAAAGATGATTGAGTACTAGAGGAGTCAGCTTTTCAAAAGGGCAGG
CACCTGAGCCAAGTAAAGAGTAAGCTGTTAACCCATTGTTTCCCTTTCAT
ACAAAGTGTTTCGGTATTATTAAAACACTCAAAACTGTGGTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_j13.b1 MSMg01no483_j13.b1 CHROMAT_FILE:
MSMg01no483_j13.b1 PHD_FILE: MSMg01no483_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:51 2005
         (308 letters)



>mm_chr12_28506779_28507486
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggcttactgaaacctactcaatgctactctcagttatcccttctctaccttgagtagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggcttactgaaacctactcaatgctactctcagttatcccttctctaccttgagtagct 260

                                                                       
Query: 61  gctgattttcactacagtttcagcaatttaccttgttgttttctttttatcctcaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgattttcactacagtttcagcaatttaccttgttgttttctttttatcctcaagatg 320

                                                                       
Query: 121 aacatttgagcatcattgatgatatttttatggtggaggaaatctgtgcatgtgacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatttgagcatcattgatgatatttttatggtggaggaaatctgtgcatgtgacaaga 380

                                                                       
Query: 181 aactttgatcacaggcttggaatacagggtcagcccgtttagctggctctccatagccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttgatcacaggcttggaatacagggtcagcccgtttagctggctctccatagccca 440

                                                                       
Query: 241 accctcatacccaacaagatgctctgctgagattcatcctaaagtttcaggagtgagggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accctcatacccaacaagatgctctgctgagattcatcctaaagtttcaggagtgagggc 500

                   
Query: 301 caattaga 308
           ||||||||
Sbjct: 501 caattaga 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_j13.g1 MSMg01no483_j13.g1 CHROMAT_FILE:
MSMg01no483_j13.g1 PHD_FILE: MSMg01no483_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:51 2005
         (620 letters)



>mm_chr12_28682832_28683851
          Length = 1020

 Score = 1183 bits (612), Expect = 0.0
 Identities = 618/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttgtcacgtgtgatgagtgtgtgtgctcttaccctctatatctcacagacaatccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tttttgtcacgtgtgatgagtgtgtgtgctcttaccctctatatctcacagacaatccac 761

                                                                       
Query: 61  tgcatgcgtgtttcatttgtacagtggctgtgagtttgctgaagataagccagtggtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgcatgcgtgtttcatttgtacagtggctgtgagtttgctgaagataagccagtggtatc 701

                                                                       
Query: 121 tacaccatcagccttcacagatactctaaagtaagggcctgactcaagtcaggtacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tacaccatcagccttcacagatactctaaagtaagggcctgactcaagtcaggtacacag 641

                                                                       
Query: 181 tcaggaaccttgggtcctcctcactcttgatgttgttggaacaggcagttctgtctttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcaggaaccttgggtcctcctcactcttgatgttgttggaacaggcagttctgtctttaa 581

                                                                       
Query: 241 agtcttaacatggtggtgtccagtctgggcaagtggctacatgtttcagtctaaaaatag 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtcagaacatggtggtgtccagtctgggcaagtggctacatgtttcagtctaaaaatag 521

                                                                       
Query: 301 tttcctcttccatcatttctgagtttgttcttctgttagccctagtaggtttgtttttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttcctcttccatcatttctgagtttgttcttctgttagccctagtaggtttgtttttag 461

                                                                       
Query: 361 atttaattcaattctaaaatagttactgtatcagtaacagcttaggaatggtggcaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atttaattcaattctaaaatagttactgtatcagtaacagcttaggaatggtggcaggtt 401

                                                                       
Query: 421 aggaaataactaccatggggtgcagctgcaatccgagaagcctggaatggaggccccatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aggaaataactaccatggggtgcagctgcaatccgagaagcctggaatggaggccccatt 341

                                                                       
Query: 481 tataagaatctcaacctccaggggcaggtaaggaagaaaaggagacaaagatgattgagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tataagaatctcaacctccaggggcaggtaaggaagaaaaggagacaaagatgattgagt 281

                                                                       
Query: 541 actagaggagtcagcttttcaaaagggcaggcacctgagccaagtaaagagtaagctgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 actagaggagtcagcttttcaaaagggcaggcacctgagccaagtaaagagtaagctgtt 221

                               
Query: 601 aacccattgtttccctttca 620
           ||||||||||||||||||||
Sbjct: 220 aacccattgtttccctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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