Query= MSMg01no483_j14.b1 MSMg01no483_j14.b1 CHROMAT_FILE:
MSMg01no483_j14.b1 PHD_FILE: MSMg01no483_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:51 2005
(683 letters)
>mm_chr12_91279432_91280514
Length = 1083
Score = 1201 bits (621), Expect = 0.0
Identities = 663/677 (97%)
Strand = Plus / Minus
Query: 4 ggaattcctcttgcagaggttcatctgaaagagttaacacaaaaagccgtgcaaagtgct 63
||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 880 ggaattcctcttggagaggttcatctgaaagagctaacacaaaaagccgtgcaacgtgct 821
Query: 64 gacctttgtgacatatgttaaggattcaagcatagtttaaagaaggcatatttgaataac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gacctttgtgacatatgttaaggattcaagcatagtttaaagaaggcatatttgaataac 761
Query: 124 cacctttttattaccattattattttctctgcatgccttctttgtgtgacacactgtatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cacctttttattaccattattattttctctgcatgccttctttgtgtgacacactgtatt 701
Query: 184 cggcactttctgtgtaaaatgtttcaatttgacatgtttaccaatcttagtgtacttatg 243
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agacactttccgtgtaaaatgtttcaatttgacatgtttaccaatcttagtgtacttatg 641
Query: 244 gccaaagacccttcttacaatgaagcctcagtttttgtttcatatcagatcccagcctca 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 640 gccaaagacccttcttacaatgatgcctcagtttttgtttcatatcagatcccagcctca 581
Query: 304 gccacagattagactactggcccatgtacattagcaggtattcattacgagggtcagaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gccacagattagactactggcccatgtacattagcaggtattcattacgagggtcagaca 521
Query: 364 gggtacttatacaaatgaggggtcttctctaaatttcaaggttttatttgctgaatgata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gggtacttatacaaatgaggggtcttctctaaatttcaaggttttatttgctgaatgata 461
Query: 424 taaccatactgaaataacctgtaagtttacttccagccctatgctagagttgacatggat 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 460 taaccatactgaaataacctgtaagtttactttcagccctatgctagagttgacatggat 401
Query: 484 gcaaaagttgatatgatatggaaatgaaaataaaaaaggaagaagaactaagtgaagtat 543
|||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
Sbjct: 400 gcaaaagttgatatgatatggaaaagaaaatacaaaaggaagaagaaccaagtgaagtct 341
Query: 544 ctcctagacccaagtaggaagtttatttgaaaactaagtgtgtgcctttcatctcagtca 603
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctcctagacccaagtagggagtttatttgaaaactaagtgtgtgcctttcatctcagtca 281
Query: 604 ctgcagttgctgttagcaatcattcttgatgacaatgaagcatgaagtaagctgggcatg 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgcagttgctgttagcaatcactcttgatgacaatgaagcatgaagtaagctgggcatg 221
Query: 664 tttgctcgagttgtttg 680
|||||||||||||||||
Sbjct: 220 tttgctcgagttgtttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_j14.g1 MSMg01no483_j14.g1 CHROMAT_FILE:
MSMg01no483_j14.g1 PHD_FILE: MSMg01no483_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:51 2005
(301 letters)
>mm_chr12_91234949_91235649
Length = 701
Score = 526 bits (272), Expect = e-154
Identities = 290/300 (96%), Gaps = 9/300 (3%)
Strand = Plus / Plus
Query: 1 caatcgctgttctgcatattcactgtggtgcctgtgggcctttatgttcagttgctccag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 caatcgctgttctgcatattcactgtggtgcctgtggtcctttatgttcagttgctccag 260
Query: 61 gtatgaaggccagcatcagcagttaaatactggaaagaacccccagagaatgcacttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgaaggccagcatcagcagttaaatactggaaagaacccccagagaatgcacttagt 320
Query: 121 tcttgaaagctacagtcttatgtgcagacccaattatcaatgaataggaaatttctggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgaaagctacagtcttatgtgcagacccaattatcaatgaataggaaatttctggaa 380
Query: 181 aagaag---cctagtcggccatcagtggaaagagaggcccattggtcatgcaaactttat 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aa----tttcctagtcggccatcagtggaaagagaggcccattggtcatgcaaactttat 436
Query: 238 atgcctcagtacaggggaatgccagggtcaagaagtgggagtgggtggggttgggggagt 297
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 atgcctcagtacaggggaatgccagggtcaagaagtgggagtgggtggg--tgggggagt 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
