BAC Information

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BAC

Clone NameMSMg01-483K18
Chromosome12 (Build37)
Map Location 105,379,070 - 105,379,313
singlet/doubletsinglet
Overlap genenone
Upstream gene9030205A07Rik, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b
Downstream geneSerpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483K18.T7 (MSMg01no483_k18.b1)MSMg01-483K18.TJ (MSMg01no483_k18.g1)
ACCAG563545AG563546
length757765
length of high quality
(start - end)		244 (78 - 321)616 (78 - 693)
definitionCHROMAT_FILE: MSMg01no483_k18.b1 PHD_FILE: MSMg01no483_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:57 2005CHROMAT_FILE: MSMg01no483_k18.g1 PHD_FILE: MSMg01no483_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGC
GGAATTCCAGCCTTTCCAGGATGCACCAACCACACATCACCTGGAAAGAC
AGTGCTCAGCAAAAGCTTGAATTGTGAATTTGTTTCCTGATGTGGCTGAG
GTCACAGAAGTACAAGTGTGGAAGAAGGGCCAGTGGCTCTATGGGTCTTA
TCATTCCAGTCTCTGCTGTTCCTCTCGATCCTGGTGTGCTCCATGGTAGA
TATCCTCTGACTATTCATGTGTGGGTATGGCCACATGTAATGTACCTCTG
CTGTGTACTTTGCTCAGAATCTTTATATAATCAGCTGACATATTAAACCT
GGTGAGCCTTCCGACAGAATCAAGGATGGAAGTACAAGGCTCATGGTGTT
TCTGAGAACCACACACCACCCCATTACACAGCTACTTCCCGTTGATAACT
CTATTGCACACTGGGTCTCTCCCTTTAGAGGGCTTATCACCTAGACTATA
TGTAATTGCAAGGGGACTGAGAAGCCTAGTTCCCTGGGCAATGAGGAGAA
ATAAACTCTGATATCTGGGTTCTAGACTCCAGTAAGAGGTGGACTCAGAA
CTTGGTTACAAGTTTCAGATCCAGCCCATGGGCCGATGAGGCATATTCAA
TACCAGCCTTCTTAGACAGCTGGGCTGAAGTCAGAACAGATGGAGGGATA
CAGTTGTGTCATGTCACTAAGGCCCTTGACTGACAGTTATGCACATTGTC
ATTTTGA

NAACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAACTAGATATTTCTTGAT
GTAATGATTCTTAAACAATCAAAACTTGACACAGGGACACAGCACAGCAC
AGTCCTAATGACCAGGTGCATGCTGTGCGTTCTCATCTTGGAAACAATGC
AATAACCGCGCAATGGTAGTGTTGGATTAATGTTTGACTTGCAAAGAAAG
TTTGAAGAGATCATGTTTAGAAATATTAGAAAACGAAACAGAGCCACATA
CTGCTAGAGCCATATAGGGTCCTTTACCAGAAAGTGAAGGAATTTACTGG
AGTTATGAAAAAGCATTAGTATGAGAGACATAATCATGGGATAAAGGCAA
AATGAAATAAGGGAACACGAACACAGGATACTTTAGTTCAAAAGGGAAAA
GCTATTGAAGTCATGAAATGAGTTTTGCACAACATTTGAGAGTGGTTCCT
GGTCTCCTTTGGATGTGTATGGATAAGAAAGTATAGAATGCATAAAATTA
TATATTAGTAAAACTAAATCAAAACACTGGGACTCTTGGGAGAGTCACTG
TGTGCAACGTGCACAAGCAGGAAGCTAGCAGAACTGCCGAGTGAAGGGTT
AACCTGACTCTCTGGCCACTGCCTGGCAGCTTTGCCCATGCCATTCATCA
GTAAGCTTCACAGGGAAATGCAAGTCGCTGACATCGGAGCTCTGAGCTCT
GAATAGAATAAGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_k18.b1 MSMg01no483_k18.b1 CHROMAT_FILE:
MSMg01no483_k18.b1 PHD_FILE: MSMg01no483_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:57 2005
         (244 letters)



>mm_chr12_105378870_105379513
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccacacatcacctggaaagacagtgctcagcaaaagcttgaattgtgaatttgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaccacacatcacctggaaagacagtgctcagcaaaagcttgaattgtgaatttgtttcc 385

                                                                       
Query: 61  tgatgtggctgaggtcacagaagtacaagtgtggaagaagggccagtggctctatgggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgatgtggctgaggtcacagaagtacaagtgtggaagaagggccagtggctctatgggtc 325

                                                                       
Query: 121 ttatcattccagtctctgctgttcctctcgatcctggtgtgctccatggtagatatcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatcattccagtctctgctgttcctctcgatcctggtgtgctccatggtagatatcctc 265

                                                                       
Query: 181 tgactattcatgtgtgggtatggccacatgtaatgtacctctgctgtgtactttgctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgactattcatgtgtgggtatggccacatgtaatgtacctctgctgtgtactttgctcag 205

               
Query: 241 aatc 244
           ||||
Sbjct: 204 aatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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