BAC Information

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BAC

Clone NameMSMg01-483P24
Chromosome12 (Build37)
Map Location 56,524,607 - 56,552,639
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871
Downstream geneNfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P24.T7 (MSMg01no483_p24.b1)MSMg01-483P24.TJ (MSMg01no483_p24.g1)
ACCAG563794AG563795
length875791
length of high quality
(start - end)		161 (49 - 209)515 (77 - 591)
definitionCHROMAT_FILE: MSMg01no483_p24.b1 PHD_FILE: MSMg01no483_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:24 2005CHROMAT_FILE: MSMg01no483_p24.g1 PHD_FILE: MSMg01no483_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,524,607 - 56,524,764)(56,552,223 - 56,552,639)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTAATTTCAAGTTGTATCACACCAGTTAATAAATGTAAAGC
CTCCAAAAAAAATCATGAAGTAACTGGAGAGAGAGAATTATAGTGATTTT
TACTTATAACATCACAGTTACAAATTAGCATCAATCCTGTAAAATATTAA
GTAATCATTAAAACCCCTGGTCTGAGAACTTATCNGAGATGGAAAAATGT
AATTTTTTTGAAAGGACAGTAANCTGGCTAATCAGTCTGAACCTCAATTT
GGAACCCTTCGGCCGGGCCCCCCAGGGTTGGAATATAAAAATGGCCCCCC
TTTGACTCCCCGGATGGGNNGGCTNTTGCNNNNNNNNNNTNNNNCTNTTT
TTNNNAGGGTGCGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG
GGGGGTGGTGTGTGGGTGGGCTGGGGGGGNNNNNNNNNNNNNNNNNNNGN
GGGGGNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCNNNNNCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGAGTTCAGTTTTTGTG

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTGGACCGGGAGATCTGCT
TGTGCCTTCTGAGTGTTCGGATTAAAGACGTGCACCAGCACCTTAGCTCC
TCCTTCCTTCTTGAGTTAGAGTCTCTCACTGAACCCGAGGCTCACTGGTT
TAACTAGAAAGTCTGGAAGACAAGCTCCATGGAGCCCCCTTCTCCCCTGG
CCCAGTTTTGCCGTCAGAGACAATGAGCTGCTTGCTATGCCTGGGTTTTT
CTTTTCCATTTTTGTTTTGTTTCTGTTTGTTAGTTAAAGCAAGTGTCTTT
ACCACTGAGCCATCTTACTGGCCCATTTTTATTTTTTATCTTTTGGCTCA
TGTATATGGTGGATGCGTGTGTGTTCACATGTGTGTGGGCATACTGGCCT
GTGGAATAATTGAGGAAGCCAGAGGCTGATGTTGGGTTATCCTCTACATT
CTTATTTGACACAAAGTCTCACGCTGAACCGGAAGTTTGAGTTTCAGCTA
GATTGGCAGGCCAGAGAGCCCTCAGCATCCACCTATTGCACCTCCAGTAC
AGATGTGGGCAGCCACAGTGCCTAAAATTTTACACGGATGCTGGGGATCC
AAAATCAGGTCCTGAGACGTGTGCAGCCCTTTCTCTTCTGAGCCATCTTC
CCAGTCCTCAGATCTTAAAAAACAAAACATGGAATTTAAATATGANAAGC
GCCGGGGCATGTGGCTCACGCCTTATCCCAGCCTCGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p24.b1 MSMg01no483_p24.b1 CHROMAT_FILE:
MSMg01no483_p24.b1 PHD_FILE: MSMg01no483_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
         (161 letters)



>mm_chr12_56524404_56524964
          Length = 561

 Score =  290 bits (150), Expect = 3e-83
 Identities = 156/158 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtaatttcaagttgtatcacaccagttaataaatgtaaagcctccaaaaaaa 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtaattccaagttgtatcacaccagttaataaatgtaaagcctccaaaaaaa 263

                                                                       
Query: 64  atcatgaagtaactggagagagagaattatagtgatttttacttataacatcacagttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcatgaagtaactggagagagagaattatagtgatttttacttataacatcacagttac 323

                                                 
Query: 124 aaattagcatcaatcctgtaaaatattaagtaatcatt 161
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 aaattagcaccaatcctgtaaaatattaagtaatcatt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no483_p24.g1 MSMg01no483_p24.g1 CHROMAT_FILE:
MSMg01no483_p24.g1 PHD_FILE: MSMg01no483_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:24 2005
         (515 letters)



>mm_chr12_56551725_56552639
          Length = 915

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 99  ctcactgaacccgaggctcactggtttaactagaaagtctggaagacaagctccatggag 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ctcactgaacccgaggctcactggtttaactagaaagtctggaagacaagctccatggag 856

                                                                       
Query: 159 cccccttctcccctggcccagttttgccgtcagagacaatgagctgcttgctatgcctgg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cccccttctcccctggcccagttttgccgtcagagacaatgagctgcttgctatgcctgg 796

                                                                       
Query: 219 gtttttcttttccatttttgttttgtttctgtttgttagttaaagcaagtgtctttacca 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gtttttcttttccatttttgttttgtttctgtttgttagttaaagcaagtgtctttacca 736

                                                                       
Query: 279 ctgagccatcttactggcccatttttattttttatcttttggctcatgtatatggtggat 338
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 735 ctgagccatcttactggcccatttttattttttatcttttggttcatgtatatggtggat 676

                                                                       
Query: 339 gcgtgtgtgttcacatgtgtgtgggcatactggcctgtggaataattgaggaagccagag 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcgtgtgtgttcacatgtgtgtgggcatactggcctgtggaataattgaggaagccagag 616

                                                                       
Query: 399 gctgatgttgggttatcctctacattcttatttgacacaaagtctcacgctgaaccggaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gctgatgttgggttatcctctacattcttatttgacacaaagtctcacgctgaaccggaa 556

                                                                    
Query: 459 gtttgagtttcagctagattggcaggccagagagccctcagcatccacctattgcac 515
           |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 555 gtttgagtttcagctagattagcaggccagagagccctcggcatccacctattgcac 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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