BAC Information

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BAC

Clone NameMSMg01-484H15
Chromosome12 (Build37)
Map Location 66,584,731 - 66,585,371
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484H15.T7 (MSMg01no484_h15.b1)MSMg01-484H15.TJ (MSMg01no484_h15.g1)
ACCAG564153AG564154
length7831,426
length of high quality
(start - end)		644 (46 - 689)---
definitionCHROMAT_FILE: MSMg01no484_h15.b1 PHD_FILE: MSMg01no484_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:03 2005CHROMAT_FILE: MSMg01no484_h15.g1 PHD_FILE: MSMg01no484_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTTCCTCAAGCAACTTGTGCCATTCTATCAGGAAGGGGCA
CACTTTTCTCTTGATTCTAACTTAAAACTTTCTATCAATTGTCATAATTT
TCTAACTTTATATTTTCTATCAATTACCCCAATTTCCCAAAGTTATTTAA
ATCAAGGTAACTTCTTCATTTTACTTAAAGTCAGAAATTCCATAAAATCA
TTAATTCATTTAGACAGCATTATGTCAAGAACTTTCATCTTCATATTGAT
CGGCAAGAAACTTGCTGAATATAGTGGCCCTTCACCCAGGAAGTAATCAG
GCCAAGTTATAGGCAGTGAGGGTCTCCACTCACACCAAGCCAAGTAAATG
AGGAGTATGGCAATGACAAACATGAGAAAGCACATCAGTAGCAAGAAGCA
ATCCTGGGAGAAGTCTCTGGTATAGTGCACAAGAGCTCACCCATTGCAAC
TGAGCAGTCTTGTCTTCAGGGCGCTCACTTGCCCGCTGTAACTCTTCATA
TATGATATCTGCCACAATACTAATGTGTGCTATTTACATTTTAACCCACA
TTTTTTATTTTGCTCTCTATATTGGCCAGAACTATCAATTACTAAAAGCA
ATGTTTCACAGTTGAAATTGACAGATTTTTTTTTGTCTGTTGTTTGACTA
TTTTGCATTAAACAAGAAAATTATAATGTTTAGTCTATAACATTGCTAAC
TGAATTTAGACACAAAGTTTTAAGTGTGTGAGG

TCCGCCACGCGCGAGCGGCGCCGGCGGCGCAGCCGCGGGGCGCTGCCTCC
CCTCAGGCGCGGCGGGCGCGCTGAGTACGGATTTCTCCCTCATATGTCCT
CATACACTCTCCCAGACGACCCCGAGACGCTGGACCACATCCTGGCCGTC
TCTCTACGTCCTCTCGCCCTAACACCGACCGACGGCCAATATGACTGTCG
GCGGCGCGGCGGCGCACGCAGTTGTAAGGCAGGATGAGGCAGGACAGGAG
CGGCTATGCGGNAGAGATACGACGTCGCTTACGCCGCGGTCGAGGCCTTC
CACTATTATTTGTTGATGTCCACTAGTTCCTAGCCGCGCCGTTTGTAATC
TCCTTCCGCGCTAACCGACACGATATGTTAAGCCTCTCCTGCGCCGCGAT
CTCGTATACACCTTAGACCCGCGTATATATCGTCGCCGCGCGCCACGCCT
TTCCCTCTATATCTTACATATCGTACATCACGACCCGCCGCTTCATATAT
TATCTCCGGTTCCCCTACACTCCAACCGCCGCGCTCGAGCTTCGGCTAGA
GGACGGGATATAAACATCGACCACGCTACCGCTGCATCAAAGCAGTTGCG
CGCTGAATTACTCATTGTTTATGGTGCTTAATCACGTCCTCGACGCGTTA
TACGTATCGATCCGACTAGGCGTTCCATATATCCGTCTGACTCTCTCGTC
ACCGCGCCCCATCTTCACGCGTCGTGTGAGCACGCTGCGTTTACTCTCGC
GCTCCTAGAATAGTCGATGCACACTTGAACTACAATGAGTGGATCTTGAC
GACGCACTTCCGTATACATGACGTGCTGAGTGAGAGCGGTANTGCGACGC
TCACGACCTACACACGTGCATACATACCAGCNTTCATCTTCTCCTCTCAC
TGACTATTATCTTATACCCGCTGTGTCTTATAACATAGTGCGTGTCGTTG
ACTCACTGCTTCTGTCTATATTTATCGACGTCGCGCTATCTGAGTGACGG
TAGCGGTCATGTACATATGACATCGCTTGTACATCTATGAGACGCAGCTA
TCTTGCTATAGCGCACAACGGCTCTACATACTCCGACGCNAGATGTAGAC
ACACACGGTGATGTTGCTGCGCATGATCACGGAAGTAANTCATGCTCGAC
TCAGTGAGTGTGTCTCTNACCACTCAGATCTGTCGGCACGCTCAGATTAC
GTACATATTAGAAGTGGTGCTCTCGTCGAGAGCAGTCACGTCAGGCGNTT
GTGCACGACCTCCAGACTACGGNTGTTGTGACTCATACACGTGCGGCCCT
CTGCTCTCTGATCTCATATTGTTNCTTATCGACGCGCCCGCGCATACATC
ACGTNACCTGCTATGCGCGGCTGTATCACAGCCTCAGCAGTCTATNTANT
GTCTGTGCGACCACCTCGCCCGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_h15.b1 MSMg01no484_h15.b1 CHROMAT_FILE:
MSMg01no484_h15.b1 PHD_FILE: MSMg01no484_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:03 2005
         (644 letters)



>mm_chr12_66584528_66585571
          Length = 1044

 Score = 1201 bits (621), Expect = 0.0
 Identities = 636/643 (98%), Gaps = 5/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttttttc---ctcaagcaacttgtgccattctatcaggaaggggcacacttt 61
           ||||||||||||  |   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttttt--ctaactcaagcaacttgtgccattctatcaggaaggggcacacttt 261

                                                                       
Query: 62  tctcttgattctaacttaaaactttctatcaattgtcataattttctaactttatatttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctcttgattctaacttaaaactttctatcaattgtcataattttctaactttatatttt 321

                                                                       
Query: 122 ctatcaattaccccaatttcccaaagttatttaaatcaaggtaacttcttcattttactt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctatcaattaccccaatttcccaaagttatttaaatcaaggtaacttcttcattttactt 381

                                                                       
Query: 182 aaagtcagaaattccataaaatcattaattcatttagacagcattatgtcaagaactttc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaagtcagaaattccataaaatcattaattcatttagacagcattatgtcaagaactttc 441

                                                                       
Query: 242 atcttcatattgatcggcaagaaacttgctgaatatagtggcccttcacccaggaagtaa 301
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 atcttcatattgatcggcaagaaacttgctgaatagagtggcccttcacccaggaagtaa 501

                                                                       
Query: 302 tcaggccaagttataggcagtgagggtctccactcacaccaagccaagtaaatgaggagt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaggccaagttataggcagtgagggtctccactcacaccaagccaagtaaatgaggagt 561

                                                                       
Query: 362 atggcaatgacaaacatgagaaagcacatcagtagcaagaagcaatcctgggagaagtct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atggcaatgacaaacatgagaaagcacatcagtagcaagaagcaatcctgggagaagtct 621

                                                                       
Query: 422 ctggtatagtgcacaagagctcacccattgcaactgagcagtcttgtcttcagggcgctc 481
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctggtgtagtgcacaagagctcacccattgcaactgagcagtcttgtcttcagggcgctc 681

                                                                       
Query: 482 acttgcccgctgtaactcttcatatatgatatctgccacaatactaatgtgtgctattta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acttgcccgctgtaactcttcatatatgatatctgccacaatactaatgtgtgctattta 741

                                                                       
Query: 542 cattttaacccacattttttattttgctctctatattggccagaactatcaattactaaa 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cattttaacccacattttttattttgctctctatattggccagaactatcaattactaaa 801

                                                      
Query: 602 agcaatgtttcacagttgaaattgacagatttttttttgtctg 644
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agcaatgtttcacagttgaaattgacagatttttttttgtctg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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