Query= MSMg01no484_k23.b1 MSMg01no484_k23.b1 CHROMAT_FILE:
MSMg01no484_k23.b1 PHD_FILE: MSMg01no484_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
(619 letters)
>mm_chr12_34098630_34099648
Length = 1019
Score = 1180 bits (610), Expect = 0.0
Identities = 616/618 (99%)
Strand = Plus / Minus
Query: 2 gaattcttcccatatggccacatgatgtccaagactctcatgctcatacataaaatgcag 61
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcttcccatatgggcacatgatgtccaagactctcatgctcatacataaaatgcag 760
Query: 62 agctacttctcataggagtacatgacaaccagtacttcttcccatgcatgtaccaataga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agctacttctcataggagtacatgacaaccagtacttcttcccatgcatgtaccaataga 700
Query: 122 taagatggcttcccataggtgtataccatatccaagacttcttacaatgtgggtacacaa 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 caagatggcttcccataggtgtataccatatccaagacttcttacaatgtgggtacacaa 640
Query: 182 tataagaaattcttgtcttttacatgagatctagggcatctacacatgtgagcataagat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tataagaaattcttgtcttttacatgagatctagggcatctacacatgtgagcataagat 580
Query: 242 atccaggacttggatccatgttgtcacatatcaaggactgcttctatgcaggtacataat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atccaggacttggatccatgttgtcacatatcaaggactgcttctatgcaggtacataat 520
Query: 302 atccaggatgtcttccaatatgggtacatgatgttgagaagttcttcccacatatataca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atccaggatgtcttccaatatgggtacatgatgttgagaagttcttcccacatatataca 460
Query: 362 ggatatcaaggactactgcccatgctggcacataaagttgcagaactccttctcttagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggatatcaaggactactgcccatgctggcacataaagttgcagaactccttctcttagaa 400
Query: 422 gtatatgataacaagtgattcttcccttatatgcaccaataaccaggactgcctcccatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtatatgataacaagtgattcttcccttatatgcaccaataaccaggactgcctcccatg 340
Query: 482 tggacatatattttccaggacttctttcagtgtgggagcacgatgtgcagcattgcatcc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tggacatatattttccaggacttctttcagtgtgggagcacgatgtgcagcattgcatcc 280
Query: 542 catgcactgaagtggaactgtttctcatgtgagaacatgatagccaacatccaggattgc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 catgcactgaagtggaactgtttctcatgtgagaacatgatagccaacatccaggattgc 220
Query: 602 ttcccatgtggatgccca 619
||||||||||||||||||
Sbjct: 219 ttcccatgtggatgccca 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_k23.g1 MSMg01no484_k23.g1 CHROMAT_FILE:
MSMg01no484_k23.g1 PHD_FILE: MSMg01no484_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
(579 letters)
>mm_chr12_33969927_33970903
Length = 977
Score = 1035 bits (535), Expect = 0.0
Identities = 566/577 (98%), Gaps = 3/577 (0%)
Strand = Plus / Plus
Query: 4 tcagggttgccctgacccacaccaatgcactctgcctgtagcaggagtaggaggagagtt 63
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 204 tcagggttgccctgacccacaccaatgtactctgcctgtagcaggattaggaggagagtt 263
Query: 64 tgcaaagcacaggctcttaagattctgattctagggtggcaggagctgcttgcttcctgc 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcaaagcacaggctcctaagattctgattctagggtggcaggagctgcttgcttcctgc 323
Query: 124 tggtactgatatttcactgcagagtttagggtttatggcactgccccaaagcccaggggg 183
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 tgttactgatatttcactgcagagtttagggtttatggcacagccccaaagcccaggggg 383
Query: 184 ggtgtgctggagaatggagactgtggga-tgtttgggttacggcgaccctgctgactcat 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 --tgtgctggagaatggagactgtgggactgtttgggttacggcgaccctgctgactcat 441
Query: 243 gagtggcctgggtgagctgcatggcctctccacactcatcttgaaagtaaggcttttccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gagtggcctgggtgagctgcatggcctctccacactcatcttgaaagtaaggcttttccc 501
Query: 303 agcagctacctcacagagccgtggggattagctgagctaagccatgtgaatgccttaaaa 362
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 agcagctaccgcacagagccgtggggattagctgagctaagccatgtgaattccttaaaa 561
Query: 363 ctgatagttcttaatcagggtttgccttaattagttacagataaactgtgagggcctggg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgatagttcttaatcagggtttgccttaattagttacagataaactgtgagggcctggg 621
Query: 423 gtgaatgaagtggactcagtcacttcatcttggactcagacactttgaggtcttgtctag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtgaatgaagtggactcagtcacttcatcttggactcagacactttgaggtcttgtctag 681
Query: 483 gatgttccctaagcactgggcgccttcaacatgatcagggcctccatgtctcgccaagca 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 682 gatgttccctaagcactgggcgccttcaacatgatcagggcctccgtgtctcgccaagca 741
Query: 543 gaagggttgttggacacccggctagcaccttgctgta 579
|||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaagggttgttggacacccggctagcaccttgctgta 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 977
Length adjustment: 10
Effective length of query: 569
Effective length of database: 967
Effective search space: 550223
Effective search space used: 550223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
