BAC Information

Click to search

BAC

Clone NameMSMg01-484O16
Chromosome12 (Build37)
Map Location 82,701,160 - 82,872,816
singlet/doubletdoublet
Overlap geneTtc9, LOC100041821, Map3k9
Upstream geneGalntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6
Downstream genePcnx, Sipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484O16.T7 (MSMg01no484_o16.b1)MSMg01-484O16.TJ (MSMg01no484_o16.g1)
ACCAG564487AG564488
length772761
length of high quality
(start - end)		263 (326 - 588)617 (73 - 689)
definitionCHROMAT_FILE: MSMg01no484_o16.b1 PHD_FILE: MSMg01no484_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:39 2005CHROMAT_FILE: MSMg01no484_o16.g1 PHD_FILE: MSMg01no484_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,872,586 - 82,872,816)(82,701,160 - 82,701,776)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGACTAGCCGCGG
AATTCTATAACTTGCGAAAAAGAGCGGGGAATGGAGAAGTAACTGTGTAT
TAAATACATGGAATCCTTAAACTGGGCTGTAAAGTCGGTGTTAGGTATAA
TTAAATGGTGAGTTGGTAGAGACTTCTCGTCTTACACGTGGGCTGGCAGA
ACAGCTAGGGATATACTTCCTGGTGCTCTCGCTGGTCCAAACTAACTGCT
TATAGGACCCAAGTGATTAAAGGTGTGTGTTTAAGATTATTTTGAGGACC
CTGAGAGCAGGTTATTTTGGTGAAGGACGTGGGTTTGTGTGTGTGTGTGT
GTGTGCGTGTGTGTGTGTGTGCGTGCGTGACTTAGGCCTTGGGGCTACTC
TCTGTATCTGTCCACTCTGAGTCCAGAAGTTCTTCAGATTTTGACTTTTA
TCTGAGTGGTTCCTAACATGGCGTATTTTTCTGTGGGTGCTGTTGTGAGT
CTGCTTTCCAAAATGCATTTGTAATTGTCTATGTAGACTTTTTGTAGAAA
ATGCAAAAGAAGAGAGGCAAGTATTTTTAATTCTTTTTCCTTAANTGAGA
ATGGGGACCTCCTTTCCCTTCCCTTTCCTTTTCCTTTCCTTTCCCTTACC
CTTTCCGTTTCTTTTCTTTTTCCTTTCCCTTCCCTTTTCCCCCCCCCCTT
TCCTTTTCTTTTCTGCCCTTTCCCTTTCATTTTAGTGCACCCCCCCCTCC
GTCTCCTTTCCTCCGCTCGCNN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGCAAGGTGGAAGAGACGTGACCAG
CATAGTGTTCTTCAGGTTTAATGTCCTCAAGTTGCTTAGCTGATTCTGGA
ATGTTACAGAGAGGAGTACCCTACTCACCTGTCATGTAGGAGCCCAAAGT
TAACTAGCTGTATGCCAAGTGACAATTGCAGAAGGTGATAGATGTAGGAA
AACACACAAACCTGCTGATAAATCACTCTTGTGGAGCCATAAATAGAGGA
TTAGGCAGTTTCCTAAATAAGGCTACCAAGAAGAGGGTGTGGTTAAGTAG
TAAGTGCCTCCCTAGCATATGCAGGGCACTTGGTTGCATCTCTAGCGTGC
AAAAAAAGTTGTAGCCAGGTGTGGTGGCTCACATTTGTAATCCCAGCACT
TGTGTGGCAGAGGCAGGAAGATCCCTGCAAGTTCAAGGCCAGTCTGGTCT
ACAAAGTGAATTCCAGGCCAGCCGGGGCTATATAGTGAGAGACTATCTCA
AAAACCCACTCTAAAACAACCCCTAGATTTTATTAATATGATCATTTGGG
CCCGGTATTCTTCTTGCCCTTTTAATCCGGGCCTTACCGACATGTGAGTC
TCACTGTTAGTCATGTTTATTCCGTCATTTTTCATGATTAANATCAACCA
AAGTTTCACCTAATTTGACTATATTTCTTTAAAAATCAACTTTCACCTTA
ATGAATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_o16.b1 MSMg01no484_o16.b1 CHROMAT_FILE:
MSMg01no484_o16.b1 PHD_FILE: MSMg01no484_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:39 2005
         (263 letters)



>mm_chr12_82872332_82872994
          Length = 663

 Score =  400 bits (207), Expect = e-116
 Identities = 225/231 (97%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtgtgtgtgtgtgtgcgtgcgtgacttaggccttggggctactctctgtatctgtccact 91
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 gtgtgtgtgtgtgtgcgtgtgtgacttaggccttggggctactctctgtatctgtctact 426

                                                                       
Query: 92  ctgagtccagaagttcttcagattttgacttttatctgagtggttcctaacatggcgtat 151
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 ttgagtccagaagttcttcagattttgactttcatctgagtggttcctaacatggcgtat 366

                                                                       
Query: 152 ttttctgtgggtgctgttgtgagtctgctttccaaaatgcatttgtaattgtctatgtag 211
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 365 ttttctgtgggtgctgttgtgagtccactttccaaaatgcatttgtaattgtctatgtag 306

                                                              
Query: 212 actttttgtagaaaatgcaaaagaagagaggcaagtatttttaattctttt 262
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actttttgtagaaaatgcaaaagaagagaggcaagtatttttaattctttt 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no484_o16.g1 MSMg01no484_o16.g1 CHROMAT_FILE:
MSMg01no484_o16.g1 PHD_FILE: MSMg01no484_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:39 2005
         (617 letters)



>mm_chr12_82700960_82701976
          Length = 1017

 Score = 1100 bits (569), Expect = 0.0
 Identities = 605/617 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcaaggtggaagagacgtgaccagcatagtgttcttcaggtttaatgtcctcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcaaggtggaagagacgtgaccagcatagtgttcttcaggtttaatgtcctcaagt 260

                                                                       
Query: 61  tgcttagctgattctggaatgttacagagaggagtaccctactcacctgtcatgtaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttagctgattctggaatgttacagagaggagtaccctactcacctgtcatgtaggag 320

                                                                       
Query: 121 cccaaagttaactagctgtatgccaagtgacaattgcagaaggtgatagatgtaggaaaa 180
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cccaaagttaactaactgtatgccaagtgacagttgcagaaggtgatagatgtaggaaaa 380

                                                                       
Query: 181 cacacaaacctgctgataaatcactcttgtggagccataaatagaggattaggcagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacaaacctgctgataaatcactcttgtggagccataaatagaggattaggcagtttc 440

                                                                       
Query: 241 ctaaataaggctaccaagaagagggtgtggttaagtagtaagtgcctccctagcatatgc 300
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct: 441 ctaaataaggctaccaagaagagggtgtgattaagtagtaggtgcctccctagcataggc 500

                                                                       
Query: 301 agggcacttggttgcatctctagcgtgcaaaaaaagttgtagccaggtgtggtggctcac 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 agggcacttggttgcatctctagcatgcaaaaaaagttgtagccaggtgtggtggctcac 560

                                                                       
Query: 361 atttgtaatcccagcacttgtgtggcagaggcaggaagatccctgcaagttcaaggccag 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttgtaatcccagcacttgtgtggcagaggcaggaagatccctgcaagttcaaggccag 620

                                                                       
Query: 421 tctggtctacaaagtgaattccaggccagccggggctatatagtgagagactatctcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggtctacaaagtgaattccaggccagccggggctatatagtgagagactatctcaaa 680

                                                                       
Query: 481 aacccactctaaaacaacccctagattttattaatatgatcatttgggcccggtattctt 540
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 681 aacccacgctaaaacaacccctagattttattaatatgatcatttggccccagtattctt 740

                                                                       
Query: 541 cttgcccttttaatccgggccttaccgacatgtgagtctcactgttagtcatgtttattc 600
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgcccttttaatctggaccttaccgacatgtgagtctcactgttagtcatgtttattc 800

                            
Query: 601 cgtcatttttcatgatt 617
           |||||||||||||||||
Sbjct: 801 cgtcatttttcatgatt 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |