Query= MSMg01no485_e03.b1 MSMg01no485_e03.b1 CHROMAT_FILE:
MSMg01no485_e03.b1 PHD_FILE: MSMg01no485_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
(247 letters)
>mm_chr12_60087232_60087879
Length = 648
Score = 437 bits (226), Expect = e-127
Identities = 240/246 (97%), Gaps = 5/246 (2%)
Strand = Plus / Plus
Query: 5 gaattctaaaactttc--ggactttagaatgtggacatctttaattccagcacctacagg 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaact--catggactttagaatgtggacatctttaattccagcacctacagg 262
Query: 63 caaagtcaggtgtatctctgtgaggctgaggccagtgtctacatagcaagttccaggcca 122
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaagtcaggtggatctctgtgaggctgaggccagtgtctacatagcaagttccaggcca 322
Query: 123 gcaagattatacaaagaaatatgattttccttaacctacaaatgacagatctatgcatct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaagattatacaaagaaatatgattttccttaacctacaaatgacagatctatgcatct 382
Query: 183 ccaatctacaacagctcacataattaatactatggggtttgggggtgggg-ttgtttgtt 241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 ccaatctacaacagctcacataattaatactatggggtttgggggtgggggttgtttgtt 442
Query: 242 tgtttt 247
||||||
Sbjct: 443 tgtttt 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no485_e03.g1 MSMg01no485_e03.g1 CHROMAT_FILE:
MSMg01no485_e03.g1 PHD_FILE: MSMg01no485_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
(545 letters)
>mm_chr12_60269641_60270585
Length = 945
Score = 901 bits (466), Expect = 0.0
Identities = 487/500 (97%), Gaps = 12/500 (2%)
Strand = Plus / Minus
Query: 1 caggacaggcagggctatacagagaaatcctgtctcaaacacacacacacacacacacac 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 496 caggacaggcagggctatacagagaaatcctgtctcaa----------acacacacacac 447
Query: 61 acaccatcattttagttactgtttcctgctactgagtttcccaacaagaatgtgtgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acaccatcattttagttactgtttcctgctactgagtttcccaacaagaatgtgtgcttc 387
Query: 121 atacctgcaggtctccagctcctcggtcgcatggctgattttctcatctactttggaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atacctgcaggtctccagctcctcggtcgcatggctgattttctcatctactttggaaag 327
Query: 181 tttttcttctttctctaatcggtaattttcttctactgttaatttccttaaaacaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttttcttctttctctaatcggtaattttcttctactgttaatttccttaaaacaaagag 267
Query: 241 tacaaccaaaagttatcaaatgagatgaggaaagacacttcatattcatcaaagaaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacaaccaaaagttatcaaatgagatgaggaaagacacttcatattcatcaaagaaaaaa 207
Query: 301 atccaccaagaggaaggtccaattctgaacatctatgccttaaatgcaagggcccccaat 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 atccaccaagaggaaggtccaattctgaacatctatgccctaaatgcaagggcccccaat 147
Query: 361 ttgtaataga-agttattccaaagcacaaaacacacactgaacctcacacattaacagta 419
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttgtaatagaca-ttattccaaagcacaaaacacacactgaacctcacacattaacagta 88
Query: 420 ggagatttcaacaccccattctcaccaatagacaggtcatcaaaacagaaacagagacac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggagatttcaacaccccattctcaccaatagacaggtcatcaaaacagaaacagagacac 28
Query: 480 agtggaattaacagaagtga 499
||||||||||||||||||||
Sbjct: 27 agtggaattaacagaagtga 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
