BAC Information

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BAC

Clone NameMSMg01-485J12
Chromosome12 (Build37)
Map Location 26,356,196 - 26,356,705
singlet/doubletsinglet
Overlap genenone
Upstream geneCys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485J12.T7 (MSMg01no485_j12.b1)MSMg01-485J12.TJ (MSMg01no485_j12.g1)
ACCAG565001AG565002
length7301,649
length of high quality
(start - end)
511 (52 - 562)---
definitionCHROMAT_FILE: MSMg01no485_j12.b1 PHD_FILE: MSMg01no485_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:36 2005CHROMAT_FILE: MSMg01no485_j12.g1 PHD_FILE: MSMg01no485_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCCACACTTCTCGCCATTCATTTTCCTCTCTCTGATAGTT
TATTTGCATAAAAGAAGACTTCACGGGGACCAGGACTGGGAACAAAATGG
GCCGTGTCTCACTCGGCCTGCTCCTGCCAAATCATCTGTAAATTATAGTC
CATCGCTGTCTTTTCATTAATTGCACATATTCTTTTGCATTTGGCTGCAA
ATTCCATCACTTTGGCCAAAAAATGTGTGTACTTCTGCAGCAACACAAAG
TAAGCACTTTGAAAGGACAAGCAGTTCTTAAAGAGGAGGTAATTTCGCCA
AGAAACCCAAGTGTTGGAGGAGGTAGAGCCCAACTGCATAAAACCCAGCC
ATCTTCTAGCCTTAGGTAGTCAGGGGAGCTTAGACCTGGTGTGCCCAGTA
GCTCTCAGCTCCCTTCTTCCTGCTCTCCTGGCCCCTTGGTAGGCTTATTT
CCTTCTCTTCTCCTCTGCTTCTCTTCATGAGCAGATGATGCAACAAAACC
TTCTTTACCTAGGAATGTAAATTTCCCTCATCCTGTCCTTGAATAGACTT
GCATAGTCTTTGAGCTCCCAAGGCACTCGCATTATAACTTCTCAGTGTGA
AAGACCTGACTCTGAGTTCTTTCCGTTTAGTAACAATTTATTGTGGGCAC
TGGTGTCTTCATCCTGTTTGGCCAAAATGT
NAGTTGTGATATGTGGTACGGGCCGAGGACAANAGAGCGCGGAGCGGGCC
TGCGCGGCTGGCGTCTCTTCTCTCACTGGTCCTGAGTAGNGTGGTCTCGT
ATTTNTTATATGTTATCTCTCTCTCCCCTCTATGNATCCACTGTGACCGA
CATCATATTCTGCTGCTATGATGTGCGTATGTGAGCTGACGACAAGTCAT
TAAGACAAGACAGACTATATAGCGCACACGACATATGTACCACACGACGC
GCCCTAACTAAGCCGTCCGTCGCACGTGCTATCACTGCATGCCGCAGTAT
GGAAGATCGCCTATCGACACATGCATACGAAATACACACTATATATCACA
CGTAGTGCGGTAGTGCTAGCCGCAGACTGGCTACGTATCCGAGGNGTGCT
GCGACGTGTGATTGTGTAGTGTGACTGTGCGCAGGCGCAGTCAGCNGGCG
CTGAATCATCTAGACATTGNTCGCGATTACGTTGATGATGACAATATGAA
CGTTGATAGTGACTGCACTAGGTGTCTTATCGCAAATATGAGTGTAGATA
TATATCATATCACCCCTAGTTCACNTTATGAAATTAGTACCCGCCGACGT
ATATATATAGCACTCATCTACACTACTACTNCCTCTATATATATACACTC
ACTCCATATACATATATTATATTCTTGATATACGAGCGCATAGATTCGCG
TCGTTACATTAGTTCAAGCACTATATCTANTTTACTCATAAGTTACACCC
TACTATATATCGTCAATCAATCACTCGTTCTTCAATTCTCANCTATCCGC
ATAGTCTCTCTTATCAGTGATTCGTCCGCCTGACGCTGTCACCATCGACG
AGTATGTGATGTATGTCAGCAGCGCACTATTAATCATTGTGATTGTAGTG
AATACTCATGTGCGCAGCATGTGATGACCGCGTATCGAATCGTTGGTCAC
ACCACAGTTANCATATGACCGTTCATAGATAGNTGCTACCATGGCTACGC
GCATATAGACTCTATTCTCTCGACGACATCTATAGCGCGCTATTTATTCG
GCAGCCGCGCACAGCTCGATGNTATGTCTGTGTCGGTGTGAGTCCGCACG
CNCGGATGCAGACGGACGCAATGTGTATGTATGCGTTGAGAGATCACATA
GTGACATCCTCACGTACTATATACTACGATATAGTAAACATAATAGATGT
TAGCGGTCCGTCGAGCTACGCGTCCGACGGTCTGTGGTAGCAGCCGATAG
TCGGCTGGTGATCGCGGCGCATGAGCGGTGAGCGTCGACTAATGCACGGC
AAACGTCTCGATGGCAGCATACAATATGATAGTATGCTCGGCCACACACA
TATGAACGCACATATATATAGTTACGACACACGCAGACAACCATATACAT
GCGATATACCTGCATCACGATGTCTCACTCTGCCTCGCGATGTGTTATAT
ATNGGTGTACCGACTCACCTCGCTGGTGCGNTCATATCTTCTATCGTGTC
ATGCCATTCATCTCTCGTTATATCGGCATCGTACATACACTGCTCGCACT
CAGTGAANTACTAGCNATCAATCAGCTCCGACGCGGCTCGCGCTGCAGCG
TCTTGATGCGATACGCAGAGTGTAACGCGGTGCAATCAGGATGACTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_j12.b1 MSMg01no485_j12.b1 CHROMAT_FILE:
MSMg01no485_j12.b1 PHD_FILE: MSMg01no485_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:36 2005
         (511 letters)



>mm_chr12_26355995_26356905
          Length = 911

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctcccacacttctcgccattcattttcctctctctgatagtttatttgcataaa 61
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctcccacactcctagccattcattttcctctctctgatagtttatttgcataaa 261

                                                                       
Query: 62  agaagacttcacggggaccaggactgggaacaaaatgggccgtgtctcactcggcctgct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaagacttcacggggaccaggactgggaacaaaatgggccgtgtctcactcggcctgct 321

                                                                       
Query: 122 cctgccaaatcatctgtaaattatagtccatcgctgtcttttcattaattgcacatattc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgccaaatcatctgtaaattatagtccatcgctgtcttttcattaattgcacatattc 381

                                                                       
Query: 182 ttttgcatttggctgcaaattccatcactttggccaaaaaatgtgtgtacttctgcagca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttttgcatttggctgcaaattccatcactttggccaaaaaatgtgtgtacttctgcagca 441

                                                                       
Query: 242 acacaaagtaagcactttgaaaggacaagcagttcttaaagaggaggtaatttcgccaag 301
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 442 acacaaagtaagcactttgaaaggacaagcagttcagaaagaggaggtaatttcgccaag 501

                                                                       
Query: 302 aaacccaagtgttggaggaggtagagcccaactgcataaaacccagccatcttctagcct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaacccaagtgttggaggaggtagagcccaactgcataaaacccagccatcttctagcct 561

                                                                       
Query: 362 taggtagtcaggggagcttagacctggtgtgcccagtagctctcagctcccttcttcctg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taggtagtcaggggagcttagacctggtgtgcccagtagctctcagctcccttcttcctg 621

                                                                       
Query: 422 ctctcctggccccttggtaggcttatttccttctcttctcctctgcttctcttcatgagc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctctcctggccccttggtaggcttatttccttctcttctcctctgcttctcttcatgagc 681

                                         
Query: 482 agatgatgcaacaaaaccttctttacctag 511
           ||||||||||||||||||||||||||||||
Sbjct: 682 agatgatgcaacaaaaccttctttacctag 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)