Query= MSMg01no485_n20.b1 MSMg01no485_n20.b1 CHROMAT_FILE:
MSMg01no485_n20.b1 PHD_FILE: MSMg01no485_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:59 2005
(691 letters)
>mm_chr12_98863884_98864969
Length = 1086
Score = 1133 bits (586), Expect = 0.0
Identities = 662/690 (95%), Gaps = 7/690 (1%)
Strand = Plus / Plus
Query: 3 ggaattcccataggaa-tccttcaattatacatttgagatgtgcaaaagcaatggaatga 61
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcccataggaact-cttcaattatacatttgagatgtgcaaaagcaatggaatga 261
Query: 62 aaggagtgttacagaggagaaagggtggcactgtgagagggaaagaaaacctacctgcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 aaggagtgttacagaggagaaagggtggcactgtgagagggaaagaaaacctaactgcag 321
Query: 122 gctaactccaacttctcccgtcttaacagaatgacatccacaagctgcctattatctatc 181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 gctaactccaacttctcccgtcttagcagaatgacatccacaagctgcctattatctatc 381
Query: 182 tcatcactgtccaaccttgaatacagagatgccatcatccatctgcagaaaacgactctt 241
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 tcatcactgtccaaccttgaatacagagatgccatcatccatctgtagaaaacgactctt 441
Query: 242 gatttagaggaatatatcttactacaactctttgtaccattcagatttttctaaacaatc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 442 gatttagaggaatatatcttactacaactctttgtaccattcagatttttctaaccaatc 501
Query: 302 acttggagcttcaacacagattggttcctggagcatgtgccatcagcatgtgtggtgcca 361
||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||
Sbjct: 502 acttggagcttcagcacagattagttcatggagcatgtgccatcagcatgtgtggtacca 561
Query: 362 cattaccagacacaggagggtggcaggaaaagtggctgcaggttaaggctgttagttgca 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cattaccagacacaggaggatggcaggaaaagtggctgcaggttaaggctgttagttgca 621
Query: 422 agtttgaatcatgaaacaatcattagctctctgtagttactaagcaggatcaataagacc 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatttgaatcatgaaacaatcattagctctctgtagttactaagcaggatcaataagacc 681
Query: 482 ccttcctttcaacaatacatgactgaagagttctcaaaaagtgaagattgtaccaaaagc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccttcctttcaacaatacatgactgaagagttctcaaaaagtgaagattgtaccaaaagc 741
Query: 542 agaaaatacttaccattgtcaagacataagcatactacagaacaccatgtgcataatcac 601
||||| ||||||||||||||||||||||| |||| ||||||| | | ||||||||
Sbjct: 742 agaaagtacttaccattgtcaagacataaacatattacagaatatta-----ataatcac 796
Query: 602 acttaatatgtaataggattatttcccctgctattgtattgttttatagtatttcaagta 661
||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 797 acttaatatataacaggattatttcccctgctgttgtattgctttatagtatttctagta 856
Query: 662 gtagaaatgctaatattgttactaatctta 691
||||||||||||||||||||||||||||||
Sbjct: 857 gtagaaatgctaatattgttactaatctta 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1086
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1076
Effective search space: 732756
Effective search space used: 732756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_n20.g1 MSMg01no485_n20.g1 CHROMAT_FILE:
MSMg01no485_n20.g1 PHD_FILE: MSMg01no485_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:59 2005
(546 letters)
>mm_chr12_99045040_99045985
Length = 946
Score = 986 bits (510), Expect = 0.0
Identities = 537/546 (98%)
Strand = Plus / Minus
Query: 1 ttgaaaagtccatttcagtggcttgatggagaagtgctttttattattgttttattattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgaaaagtccatttcagtggcttgatggagaagtgctttttattattgttttattattg 687
Query: 61 ttgtagaggagacatacccaggggctagattacaagagaccatatcacacattgttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttgtagaggagacatacccaggggctagattacaagagaccatatcacacattgttcatt 627
Query: 121 gttggagctgatgtttgagtatagatattttcttctcggctcttgatccacagcgaaatg 180
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct: 626 gttggagctgatgtttgagtatagatattttcttcttgactcttgatctacagcgaaatg 567
Query: 181 ccaagaaaatgctgtgtgtttactagcaagcaacaatcagcagtgggtacagggtccctg 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 ccaagaaaatgctgtgtgtttactagcaagcaacaatcagcagtggttacagggtccctg 507
Query: 241 tcccttttacaccattataagctgtcttttatgattattatatacttatgcgttgaggtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 tcccttttacaccattataagctgtcttttatgattattatatacttatgtgttgaggtt 447
Query: 301 catttgtgcactttacagtacaattgctggctttcttttgctccagtttgagagtacaga 360
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 446 catttgtgcactttacagtacaattgttggctttcttttgctccagcttgagagtacaga 387
Query: 361 aaagattctctactttggccttggaaaaggcaggcaagattgctggtgtgaaatgggata 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 aaagattctctactttggccttggaaaaggcaggcaaggttgctggtgtgaaatgggata 327
Query: 421 aaagggtagttttatgattggaggagaatctcaggcattgtggtaagatgagataatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaagggtagttttatgattggaggagaatctcaggcattgtggtaagatgagataatgca 267
Query: 481 cagagtgatgagcaaacgtgtaagtaccccatgatgaggctgaatctcaaagcagaccga 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgagtgatgagcaaacgtgtaagtaccccatgatgaggctgaatctcaaagcagaccga 207
Query: 541 ctggat 546
||||||
Sbjct: 206 ctggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
