Query= MSMg01no485_o19.b1 MSMg01no485_o19.b1 CHROMAT_FILE:
MSMg01no485_o19.b1 PHD_FILE: MSMg01no485_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:04 2005
(548 letters)
>mm_chr12_99932817_99933764
Length = 948
Score = 959 bits (496), Expect = 0.0
Identities = 527/545 (96%), Gaps = 15/545 (2%)
Strand = Plus / Plus
Query: 17 gaattcaaggcctgcngcgtcttcagcactatttcccagacagtcagggctacagagacc 76
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggcctgctg-gtcttcagcactatttcccagacagtcagggctacagagacc 264
Query: 77 ctgtctcaaaagagtgctcttcccaaactt--------aaaaaaaaaaaaaaatccaaaa 128
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 ctgtctcaaaagagtgctcttcccaaacttaaaaaaaaaaaaaaaaaaaaaaatccaaaa 324
Query: 129 ccaacatatattcacaagtgggagaaggagctgctgacagagcacacttaccaacaaatg 188
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaacgtatattcacaagtgggagaaggagctgctgacagagcacacttaccaacaaatg 384
Query: 189 cctaacaccatctgcacagatggccagcctgggcaagaacacacaccttcagagtgttaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctaacaccatctgcacagatggccagcctgggcaagaacacacaccttcagagtgttaa 444
Query: 249 gtacagaatcaaaggacacagggcctagggacagaggcagtcattcttacccactggcat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacagaatcaaaggacacagggcctagggacagaggcagtcattcttacccactggcat 504
Query: 309 cttcctggcaacatccagtgggaaggaaaaagcagaagccagttctgaaaaaacaaaaca 368
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgctggcaacatccagtgggaaggaaaaagcagaagccagttctgaaaaaacaaaaca 564
Query: 369 aaaaaaaacgaaaaaaaaaaaaaaaaac-----cacggaacaaaagagccctacctgcag 423
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 aaaaaaa-cgaaaaaaaaaaaaaaaaacaaaaccacggaacaaaagagccctacctgcag 623
Query: 424 aaaggtctgacccaggcaacctttctaacagtctgcctttttctcatcattcttctaagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaggtctgacccaggcaacctttctaacagtctgcctttttctcatcattcttctaagc 683
Query: 484 tcagttcaaagaaaggccagccatcatcaagttcccacataaaggaaaacaactgttggc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcagttcaaagaaaggccagccatcatcaagttcccacataaaggaaaacaactgttggc 743
Query: 544 tctgt 548
|||||
Sbjct: 744 tctgt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_o19.g1 MSMg01no485_o19.g1 CHROMAT_FILE:
MSMg01no485_o19.g1 PHD_FILE: MSMg01no485_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:04 2005
(577 letters)
>mm_chr12_100057512_100058488
Length = 977
Score = 1062 bits (549), Expect = 0.0
Identities = 570/577 (98%)
Strand = Plus / Minus
Query: 1 tctcatgtcttccttttttatcttctgatttctatgccattaatggaataattggaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tctcatgtcttccttttttatcttctgatttctatgccattaatggaataattggaactt 718
Query: 61 ttcttacatacagtaataaacaaaaaacaagtctttatagtttatctgcgctaaacctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttcttacatacagtaataaacaaaaaacaagtctttatagtttatctgcgctaaacctaa 658
Query: 121 cactatttcattacgaacgatactgttgtaatgtttgaaattctaatatatgtgataatc 180
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caatatttcattatgaacgatactgttgtaatgtttgaaattctaatatatgtgataatc 598
Query: 181 cttctcctttttcctttgctgctgagaagaggatctaggtaaccctctctttgttgttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttctcctttttcctttgctgctgagaagaggatctaggtaaccctctctttgttgttta 538
Query: 241 tgagactaaattttgtgttttgatcacctctcctacttgccattaatgagcaatgctgct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 537 tgagactaaattttgtgttttgatcacctctcctacttgccattaatgagcagtgctgct 478
Query: 301 ttgtttctgcttttcctccctctgaaggcgtcttcattatttggcttacataagtcactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgtttctgcttttcctccctctgaaggcgtcttcattatttggcttacataagtcactc 418
Query: 361 tattactaaaattttatccaagttgaatagttttcaagtcaaagttgtaaacaaaagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 417 tattactaaaattttatccaagttgaatagttttcaagtcaaagttgtaaatgaaagttc 358
Query: 421 attttaggcagtaatataatttatgtaaatagcccttataaaaattaaagtatgcttaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 attttaggcagtaatataatttatgtaaatagcccttataaaaattaaagtatgcttaat 298
Query: 481 tgctgtatgtgattatagataaaacttgcaaatggaattagagttaaagctatcagatac 540
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 297 tgctgtatgtgattatagataaaagttgcaaatggaattagaattaaagctatcagatac 238
Query: 541 ttaaaatttgaataaagtttaccaacaacattgactt 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttaaaatttgaataaagtttaccaacaacattgactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
