BAC Information

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BAC

Clone NameMSMg01-487I08
Chromosome12 (Build37)
Map Location 69,395,027 - 69,553,819
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487I08.T7 (MSMg01no487_i08.b1)MSMg01-487I08.TJ (MSMg01no487_i08.g1)
ACCAG566465AG566466
length749745
length of high quality
(start - end)		665 (85 - 749)641 (76 - 716)
definitionCHROMAT_FILE: MSMg01no487_i08.b1 PHD_FILE: MSMg01no487_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:09 2005CHROMAT_FILE: MSMg01no487_i08.g1 PHD_FILE: MSMg01no487_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,395,027 - 69,395,691)(69,553,180 - 69,553,819)
sequence
CCTCAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCGCGGAATTCATATTATTATCCGCTTTTAATAAAAGCTGATGTAATCA
GTACATTTGAATATTTTAGAAAAAATATCATTTTTAAATTCCCCTAGAAG
CTGAAATTATAGTCTGTTTTGCTTTTTAATTGTGCCAAGATAATATTCAT
ACCAAAATTTGACAAGAATTTTAATATAAATAAAATTTAATTGCAATTTA
TTACAAGTATTTAGAATTTTAAGAATCTATCATGATCATTAAAATTCATA
TCTGAACTCATATCAAGTAGAATCCACAGATTATACATATGACTAATGCA
TCAAATACATCAAAAGACATGTAATTTATCCCAGCATATAAATATTACAT
GGTAGTATATTTTCCAGATATATGTAACAAGAATGTAGAACCTGTTCTTG
GACCTGCAGATGCCAAATGGGTAACTGAAAGCAGAAAGCTAGTCATTTCT
GCCTTCATCTTGCATGTCTTCATTGCTATGAACTATGCATTAGGTTCCTG
CTCAACTCCATATATGTCAATCATACATGAAATATCAGCTAAAATGTGTG
AGGCTGAGTAGCTCTAGAGTTACCCAACATACCTCACCAACACACCAAGG
TAAGAGAAAATAGGATATGTACAAGTCTCTTGCTTGCCTTCACTGTAACT
GATTTCTACCATTTAATTTTTGAAACCAATGTCTAGACATGGTTTGGGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGATTATTTTTTTGCTGCTTTGTCT
TTGTCTTCTTAGTTGTTTGGCTTCTAACATGAAGTGTTATGGCATATTGT
ATTTGTTCTTCTATGTGTAGTGACATGTTATGCCGAGCTATTGCCTCTTT
GTACAAGTTGATTGTGTGCTTTACTTCCAAACTGAGTATTTAGGAAAAAT
GAAATGGCATATTAAAATAATCCAGATGGAGATATTTATATCATAGGGGT
CAGCTAACATTATGAGCCACAATTCCTGAATATCTCTAGAATGCTATTTA
AAATTTAGCAATAAGTAATTATCCTAAAATGTTTTCTCATAGGTGAGTTT
CTGGTATTCATAAATTTCATTACAGATGTGGTTTTATATATTTTCTTTTA
CCTTGTAAGTTTAAGATTCTTTTGAGATTCTCATATCTGGAATTGAATAA
TTTCATCAGATTTAGGGTCTTTATGGGTAGTATTTGTATTTTAGTTGTTT
TTTTCTTTCTTTCCTCATTTCAGATCCCTCTTTTCCTCTGTGACTCTGTG
TGCAGGGTTTAATTAGTCAATTTATTCACCAAGATATTGATATTATGTTT
CTTTTCCTCTAGTATTTTCCTGTATTTAATTTGGATAATTTGGTTCTCAT
CCTCAAGTTCTTTCTGTTCTCTTGGTCTATTTAGCTATTAATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_i08.b1 MSMg01no487_i08.b1 CHROMAT_FILE:
MSMg01no487_i08.b1 PHD_FILE: MSMg01no487_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:09 2005
         (665 letters)



>mm_chr12_69394827_69395891
          Length = 1065

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagctgatgtaatcagtacatttgaatattttagaaaaaatatcatttttaaattcccc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctgatgtaatcagttcatttgaatattttagaaaaaatatcatttttaaattcccc 260

                                                                       
Query: 61  tagaagctgaaattatagtctgttttgctttttaattgtgccaagataatattcatacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaagctgaaattatagtctgttttgctttttaattgtgccaagataatattcatacca 320

                                                                       
Query: 121 aaatttgacaagaattttaatataaataaaatttaattgcaatttattacaagtatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatttgacaagaattttaatataaataaaatttaattgcaatttattacaagtatttag 380

                                                                       
Query: 181 aattttaagaatctatcatgatcattaaaattcatatctgaactcatatcaagtagaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttaagaatctatcatgatcattaaaattcatatctgaactcatatcaagtagaatc 440

                                                                       
Query: 241 cacagattatacatatgactaatgcatcaaatacatcaaaagacatgtaatttatcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagattatacatatgactaatgcatcaaatacatcaaaagacatgtaatttatcccag 500

                                                                       
Query: 301 catataaatattacatggtagtatattttccagatatatgtaacaagaatgtagaacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catataaatattacatggtagtatattttccagatatatgtaacaagaatgtagaacctg 560

                                                                       
Query: 361 ttcttggacctgcagatgccaaatgggtaactgaaagcagaaagctagtcatttctgcct 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttagacctgcagatgccaaatgggtaactgaaagcagaaagctagtcatttctgcct 620

                                                                       
Query: 421 tcatcttgcatgtcttcattgctatgaactatgcattaggttcctgctcaactccatata 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tcatcttgcatgtcttcattgctatgaactatgcattaggttcctgttcaactccatata 680

                                                                       
Query: 481 tgtcaatcatacatgaaatatcagctaaaatgtgtgaggctgagtagctctagagttacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtcaatcatacatgaaatatcagctaaaatgtgtgaggctgagtagctctagagttacc 740

                                                                       
Query: 541 caacatacctcaccaacacaccaaggtaagagaaaataggatatgtacaagtctcttgct 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacatacctcaccaacacacgaaggtaagagaaaataggatatgtacaagtctcttgct 800

                                                                       
Query: 601 tgccttcactgtaactgatttctaccatttaatttttgaaaccaatgtctagacatggtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgccttcactgtaactgatttctaccatttaatttttgaaaccaatgtctagacatggtt 860

                
Query: 661 tgggg 665
           |||||
Sbjct: 861 tgggg 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_i08.g1 MSMg01no487_i08.g1 CHROMAT_FILE:
MSMg01no487_i08.g1 PHD_FILE: MSMg01no487_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:09 2005
         (641 letters)



>mm_chr12_69552980_69554020
          Length = 1041

 Score = 1145 bits (592), Expect = 0.0
 Identities = 628/640 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattatttttttgctgctttgtctttgtcttcttagttgtttggcttctaacatgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 840 tgattatttttttgctgctttgtctttgtcttcttagttgtttggcttctaacatgaggt 781

                                                                       
Query: 61  gttatggcatattgtatttgttcttctatgtgtagtgacatgttatgccgagctattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gttatggcatattgtatttgttcttctatgtgtagtgacatgttatgccgagctattgcc 721

                                                                       
Query: 121 tctttgtacaagttgattgtgtgctttacttccaaactgagtatttaggaaaaatgaaat 180
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 720 tctttgtacaagttgattgcgtgctttacttccaagctgagtatttaggaaaaatgaaat 661

                                                                       
Query: 181 ggcatattaaaataatccagatggagatatttatatcataggggtcagctaacattatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggcatattaaaataatccagatggagatatttatatcataggggtcagctaacattatga 601

                                                                       
Query: 241 gccacaattcctgaatatctctagaatgctatttaaaatttagcaataagtaattatcct 300
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gccacaattcccgaacatctctagaatgctatttaaaatttagcaataagtaattatcct 541

                                                                       
Query: 301 aaaatgttttctcataggtgagtttctggtattcataaatttcattacagatgtggtttt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 540 aaaatgttttctcataggtgagtttctggtactcataaatttcattacagatgtggtttt 481

                                                                       
Query: 361 atatattttcttttaccttgtaagtttaagattcttttgagattctcatatctggaattg 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atatattttcttctaccttgtaagtttaagattcttttgagattctcatatctggaattg 421

                                                                       
Query: 421 aataatttcatcagatttagggtctttatgggtagtatttgtattttagttgtttttttc 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 aataatttcatcagatttagggtctttataggtagtatttgtattttagttgtttttttc 361

                                                                       
Query: 481 tttctttcctcatttcagatccctcttttcctctgtgactctgtgtgcagggtttaatta 540
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 360 tttctttcctcatttcagatccctcttctcctatgtgactctgtgtgcagggtttaatta 301

                                                                       
Query: 541 gtcaatttattcaccaagatattgatattatgtttcttttcctctagtattttcctgtat 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 gtcaatttattcaccaagatattgatattatgtttcttttcctctagtattttcctttat 241

                                                   
Query: 601 ttaatttggataatttggttctcatcctcaagttctttct 640
           |||||||||||||||| |||||||||||||||||||||||
Sbjct: 240 ttaatttggataattttgttctcatcctcaagttctttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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