BAC Information

Click to search

BAC

Clone NameMSMg01-487O03
Chromosome12 (Build37)
Map Location 103,938,243 - 103,938,825
singlet/doubletsinglet
Overlap geneItpk1
Upstream geneMtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneMoap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487O03.T7 (MSMg01no487_o03.b1)MSMg01-487O03.TJ (MSMg01no487_o03.g1)
ACCAG566739AG566740
length1,247752
length of high quality
(start - end)
---589 (80 - 668)
definitionCHROMAT_FILE: MSMg01no487_o03.b1 PHD_FILE: MSMg01no487_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:37 2005CHROMAT_FILE: MSMg01no487_o03.g1 PHD_FILE: MSMg01no487_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCGGGTATAAGGAGTGACGTAGGGCGCGGACGCACGGCGGACAGAGGTG
TGTCTCTTCGAAGAGAGGGCGATGGGGATATCTGCCGGCTGTATTCCCAC
AAGAGTAACGAACACTGACGAACGACAGCACGAGGCGCTATAAGCGATTG
TATTTGTGTGCGTGGAGTATTGCGCGTCTTATAGAGCGATCTGTGAATCT
CAGACGCGCGGACGCCACTGCAATACTTGTGCTATATGACCNTACACACA
ATAAGCATAAAGACACTAGAGAGAGACTCGACGCGCGTGATAGTTCGTTT
GGTCGCGCAGCTACGCCAGCAGCGGCGGTCTAGGTGACTCAATGCACGTA
CAATCTACAGTCGCACCGCCATTCACTGTAGCGAAATATGTCACGTTATC
ACCCGATACGCGCGCGAAGTCGCTAAGATCGCTAGTTATGAAATACTGAC
CTCAGCGTGCCGCTTATCAACAACGACCCGCACTGGGTTTTNTAACGCGC
GCGCACGTGTCGTGCATGAGTGTGTATATAATCCGACACTACGCCGCTCC
GCGTCGTGAGAGCGATGTGGTTGTGTATGCATCTGAACTGCGCATAGACC
AATGCGCCCGACACTATATTGATATCGAAGCGAACGTATCTTAGTGAGTT
TAGCTAAGTCACGACGCCCCGTCTCGCTGTGCTTATATGCGCCGGACCCA
GATCGCACATGTAACGTTGTACCGCCTTCTATGAACACGCCTATCAGTAA
TTAGAATACAAGTTATGCCTCCTCCGCGTTATTTTCAATAGGTGTGTCGT
GTCCGATACCCTTCTCCACGAAAATATTGCATTGGTTTTATCAGATACTC
AGCATAGAAACGCACAGTCATACTTCACTCGACAATGGCTATAATCTGTT
CGTTCATGTCTACACCTGGAAAGCACTCGTCATTATACTTTTACGGTCGC
ATGCGCAGCGCGGCACACGACATCGTCATATACACGGATATTATATGACG
TGCACAGCGCTCAGTTATATCACTGACACTGAATGATCGTTTGTCCTATG
CCTCGGCACTACACCACACATGCTTCCGTGACAAGTTACTATCGAAATAC
ATTAAAGCGAAGCGGCGAATACGTGAGNATAATGTACTCCCGATAAGCTC
AGTGGTTATACTCTATGTCAACATTCTGGATAGCAGTGCCGCCGTAACTG
CGACATATGACGTGTGAANGACAGTCCACACCACCATCGTATATGTG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATGACCTAACCAAAA
AAACAAAAACAAAAACAAAACACGAAGCTACCTCCTTGCATTCATAATTC
CTTCAGATTCTCCAGCTAGGGGGCTCCAGCAGCCCGTCAAAGACAAGGGT
TGTAAGAGCCAGATGTAGGTGGTAAAGTACAACAGCCACCAGGCAGGGTG
GGCTGACCTGAAGTTCAGTTCCACTAGCCCCACCTCTTAGCAAGAGAGTC
AGTTAGCAATGATCACAGACCGTATTTGTAAAAACTTAGTCCAAGGTCAC
TAAATCTACAAAGCCAAATGGGCATCACATGGATGGTCAGTTGTGAACCC
AGCCTTGGAAACCTAGGCAGTTTTTAACCAAAGACATCTATCTACCCCCA
CAGCAGGTCCAGTCTGTACCCAAGAGCTGGAGAAAGAGATTTATTTGCAA
GGCTGGGTTACATTTTTCATGGGCTGCTGTAAAGTGAACCTGACTCAGGA
TGCCTCTCTCTATCACAGCTCTGAGGTCATAGCAAAGCCAACTACTAAAA
TATACAGAAAAATGCCGGGCTACAGACCAGCACCATTCAATCCTGGTAAC
GAGCCTCTCCTCTCCCCCTGCAGAATCGCCTAGAATTGCAGCCCAGAATA
CGAAGCTATTTCAGCAGAAAGCAGCCTCCAGATGGCTTTGTTTTAAAGGA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_o03.g1 MSMg01no487_o03.g1 CHROMAT_FILE:
MSMg01no487_o03.g1 PHD_FILE: MSMg01no487_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:37 2005
         (589 letters)



>mm_chr12_103938037_103939025
          Length = 989

 Score = 1013 bits (524), Expect = 0.0
 Identities = 571/590 (96%), Gaps = 8/590 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagaatgacctaaccaaaaaaacaaaaacaaaaacaaaacacgaag-ctacctccttg 59
           |||||||||||||||||||||||||||||||||||      ||||| | |||||||||||
Sbjct: 207 ttcagaatgacctaaccaaaaaaacaaaaacaaaa------cacga-gactacctccttg 259

                                                                       
Query: 60  cattcataattccttcagattctccagctagggggctccagcagcccgtcaaagacaagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 260 cattcataattccttcagattctccagctagggggctccagcagcccatcaaagacaagg 319

                                                                       
Query: 120 gttgtaagagccagatgtaggtggtaaagtacaacagccaccaggcagggtgggctgacc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgtaagagccagatgtaggtggtaaagtacaacagccaccaggcagggtgggctgacc 379

                                                                       
Query: 180 tgaagttcagttccactagccccacctcttagcaagagagtcagttagcaatgatcacag 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaggttcagttccactagccccacctcttagcaagagagtcagttagcaatgatcacag 439

                                                                       
Query: 240 accgtatttgtaaaaacttagtccaaggtcactaaatctacaaagccaaatgggcatcac 299
           ||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accgtacccgcaaaaacttagtccaaggtcactaaatctacaaagccaaatgggcatcac 499

                                                                       
Query: 300 atggatggtcagttgtgaacccagccttggaaacctaggcagtttttaaccaaagacatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atggatggtcagttgtgaacccagccttggaaacctaggcagtttttaaccaaagacatc 559

                                                                       
Query: 360 tatctacccccacagcaggtccagtctgtacccaagagctggagaaagagatttatttgc 419
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatctacccccacagcaggtctagtctgtacccaagagctggagaaagagatttatttgc 619

                                                                       
Query: 420 aaggctgggttacatttttcatgggctgctgtaaagtgaacctgactcaggatgcctctc 479
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 620 aaggctgggttacatttttcatgggctgctgtaaattgaacctgactcaggatgcctctc 679

                                                                       
Query: 480 tctatcacagctctgaggtcatagcaaagccaactactaaaatatacagaaaaatgccgg 539
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 680 tctatcacagctctgaggtcatagcaaagccagctactaaaatacacagaaaaatgccgg 739

                                                             
Query: 540 gctacagaccagcaccattcaatcctggtaacgagcctctcctctccccc 589
           |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 gctacagaccagcaccattcaatcctggtaacgagcctcttctctccccc 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)