BAC Information

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BAC

Clone NameMSMg01-488F18
Chromosome12 (Build37)
Map Location 115,328,304 - 115,434,522
singlet/doubletdoublet
Overlap geneIgh, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4
Upstream geneMta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2
Downstream geneEG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F18.T7 (MSMg01no488_f18.b1)MSMg01-488F18.TJ (MSMg01no488_f18.g1)
ACCAG567101AG567102
length748770
length of high quality
(start - end)		702 (37 - 738)609 (75 - 683)
definitionCHROMAT_FILE: MSMg01no488_f18.b1 PHD_FILE: MSMg01no488_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:15 2005CHROMAT_FILE: MSMg01no488_f18.g1 PHD_FILE: MSMg01no488_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:15 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(115,328,304 - 115,329,001)(115,434,169 - 115,434,522)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TCTACCGAACCACATATATTCCTTATTATATACATAAAAGTCTTCATATT
ATACTATAAACAAAGCTACTCAACCTAGCTTGCTGTCTTAGTTAGGGTTT
TACTGCTGTGAACAGACACCATCACCAAAGCAAGTCTTATAAAAAACAAC
ATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTAAGTCCATTATCATCA
AGAGGGGAGCATGGTAGTATCTAGGCAGGCATGGCACAGAAGGAGCGGAG
AGTTCTATGTCTTCATCCACTTGCCAAGTAGGTAGCAGAAACAGCTATGA
TGAACAAATATTTGATGGAGAAGAAGGAATGAGAGAAATATGGAGTTTTG
CATGAGCTGTGGAGAGAAGCAAAACTAGAAACAGGATGTCTGTGCCAGGT
ATGAGAGAGGGTTGAGATCCTGTGAAACATGTATTTGCCCAGTAGGTTTA
GGAGGTAGTATGTAGAAGCCTGGAGCTTGTGTAGACAGACAGCCATTGAA
CATGCTACCCAGCTGTGGAATTTTTCTGGTTCTGGGCAAAAAGTGATGCT
GAAAATGAAGAAAAATTCCAATTTGGATTAGATATTCTTGAAGGGACCAT
CATTGTTCATGATATCGCTGGAGGCCATATAGGGGACTGTGGTCAATGCT
GCTGCTTTAGGCCATGATGAAAGTCAAGATCTATGTGGATGTTTGAAN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCCCAAAACTCTGGCAGAAGACCT
GCTAAACAGGAAGACACATCACTGATAACGTCTTTAGTTAATACAATGCC
CACAGCCCACTAAAACTCTTTAAATTATACCCAGAAATCTTCAATGGCAT
GCTTCCTAGAGGCTCCACATTCCGGCCCACTCTGACCAAGAACCGTTCCT
TTTGAAAAGAATTTGAGGGACAAACCTGAGAGAAGCCTGAGCGAAAGGAG
TTCCAGTGATAGGCCCATCTTGAGATCCATCTCAAGGGGAAGCTCCAAGG
CCTGACACTATTACTGATGCTACTATGTGCTCATAGACAGGTCCCTAGCA
TGGCTACCCACTGGGAAGCCCAAAAAGCATGTGAAGGAGACAGATGCAGA
TACTTACACCCAACCAATGCACAGAAACTGGGGATACCTGGACCTGAGTG
AGAGAAAACCTGGAAGAGGCTGAGGAGCAGGGAAATCCCATAGGAAGACT
AGCAGTCTCAACTAACCTTCCTTCCCACCCCTGAGATCTCAGACACATGG
CAATCAACCAGGCAGAATACAACAGCTGATATGATACCCCTCTACATGTA
CACAGCAGAGGACTGTGTAGTCTGGCCTCAACGAGAGAAGGTGCATATAT
GCCTCCAGAGACTTGAGGCCACAGGGAGTGGAAGATATGGGGGGNTTGTT
GTGGAAGANNNNNNNNNTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f18.b1 MSMg01no488_f18.b1 CHROMAT_FILE:
MSMg01no488_f18.b1 PHD_FILE: MSMg01no488_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:15 2005
         (702 letters)



>mm_chr12_115328100_115329201
          Length = 1102

 Score = 1319 bits (682), Expect = 0.0
 Identities = 694/698 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtctaccgaaccacatatattccttattatatacataaaagtcttcatatt 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtcaaaagaaccacatatattccttattatatacataaaagtcttcatatt 264

                                                                       
Query: 65  atactataaacaaagctactcaacctagcttgctgtcttagttagggttttactgctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atactataaacaaagctactcaacctagcttgctgtcttagttagggttttactgctgtg 324

                                                                       
Query: 125 aacagacaccatcaccaaagcaagtcttataaaaaacaacatttaattggggctggctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagacaccatcaccaaagcaagtcttataaaaaacaacatttaattggggctggctta 384

                                                                       
Query: 185 caggttcagaggttaagtccattatcatcaagaggggagcatggtagtatctaggcaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggttcagaggttaagtccattatcatcaagaggggagcatggtagtatctaggcaggc 444

                                                                       
Query: 245 atggcacagaaggagcggagagttctatgtcttcatccacttgccaagtaggtagcagaa 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggcacagaaggagcagagagttctatgtcttcatccacttgccaagtaggtagcagaa 504

                                                                       
Query: 305 acagctatgatgaacaaatatttgatggagaagaaggaatgagagaaatatggagttttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagctatgatgaacaaatatttgatggagaagaaggaatgagagaaatatggagttttg 564

                                                                       
Query: 365 catgagctgtggagagaagcaaaactagaaacaggatgtctgtgccaggtatgagagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgagctgtggagagaagcaaaactagaaacaggatgtctgtgccaggtatgagagagg 624

                                                                       
Query: 425 gttgagatcctgtgaaacatgtatttgcccagtaggtttaggaggtagtatgtagaagcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgagatcctgtgaaacatgtatttgcccagtaggtttaggaggtagtatgtagaagcc 684

                                                                       
Query: 485 tggagcttgtgtagacagacagccattgaacatgctacccagctgtggaatttttctggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggagcttgtgtagacagacagccattgaacatgctacccagctgtggaatttttctggt 744

                                                                       
Query: 545 tctgggcaaaaagtgatgctgaaaatgaagaaaaattccaatttggattagatattcttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctgggcaaaaagtgatgctgaaaatgaagaaaaattccaatttggattagatattcttg 804

                                                                       
Query: 605 aagggaccatcattgttcatgatatcgctggaggccatataggggactgtggtcaatgct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagggaccatcattgttcatgatatcgctggaggccatataggggactgtggtcaatgct 864

                                                 
Query: 665 gctgctttaggccatgatgaaagtcaagatctatgtgg 702
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gctgctttaggccatgatgaaagtcaagatctatgtgg 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no488_f18.g1 MSMg01no488_f18.g1 CHROMAT_FILE:
MSMg01no488_f18.g1 PHD_FILE: MSMg01no488_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:15 2005
         (609 letters)



>mm_chr12_115434169_115435177
          Length = 1009

 Score =  607 bits (314), Expect = e-178
 Identities = 344/354 (97%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcccaaaactctggcagaagacctgctaaacaggaagacacatcactgataacgtctt 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 354 ttgcccaaaactatggcagaagacctgctaaacaggaagacacatcactgataatgtctt 295

                                                                       
Query: 61  tagttaatacaatgcccacagcccactaaaactctttaaattatacccagaaatcttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tagttaatacaatgcccacagcccactaaaactctttaaattatacccagaaatcttcaa 235

                                                                       
Query: 121 tggcatgcttcctagaggctccacattccggcccactctgaccaagaaccgttccttttg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 234 tggcatgcttcctagaggctccacgttccggcccactctgaccaagaactgttccttttg 175

                                                                       
Query: 181 aaaagaatttgagggac-aaacctgagagaagcctgagcgaaaggagttccagtgatagg 239
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 174 aaaagaatttgagggacaaaacctgagagaagcctgaacgaaaggagttccagtgctagg 115

                                                                       
Query: 240 cccatcttgagatccatctcaaggggaagctccaaggcctgacactattactgatgctac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 cccatcttgagatccatctcaaggggaagctccaaggcctgacactattactgatgctac 55

                                                                 
Query: 300 tatgtgctcatagacaggtccctagcatggctacccactgggaagcccaaaaag 353
           |||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct: 54  tatgtgctcatagacaggaccctagcatgactaccccctgggaagcccaaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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