Query= MSMg01no489_h06.b1 MSMg01no489_h06.b1 CHROMAT_FILE:
MSMg01no489_h06.b1 PHD_FILE: MSMg01no489_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(605 letters)
>mm_chr12_10814020_10815024
Length = 1005
Score = 1048 bits (542), Expect = 0.0
Identities = 589/608 (96%), Gaps = 7/608 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcattttctctcttcttggtatcttcactgcactatccaaactctctgaaact 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcttcataagctctcttcttggtatcttcactgcactatccaaactctctgaaact 797
Query: 65 ggcctctaatctgaagatgagagacacataaaacagtttgttaaatcaggactcactgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggcctctaatctgaagatgagagacacataaaacagtttgttaaatcaggactcactgga 737
Query: 125 gagttagctttgatgggcctggcactcactatgaactcactagttagaccaatgtggaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gagttagctttgatgggcctggcactcactatgaactcactagttagaccaatgtggaca 677
Query: 185 ctcacagatctccaactgcc------tctgcctcctgagtgctgggattaaagaaagaat 238
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 676 ctcacagatctccaactgccactgcctctgcctcctgagtgctgggattaaagaaagaat 617
Query: 239 gtgtcatcatgtctggtttctcctgtagttttattgaatagtttgtttttaaaataataa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgtcatcatgtctggtttctcctgtagttttattgaatagtttgtttttaaaataataa 557
Query: 299 tagattttaatctcatttcttcataacgctttgattaggttgggtctcatgataatgttc 358
|| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 556 taaatttttatctcatttcttcataacactttgattgggttgggtctcatgataatgttc 497
Query: 359 caaagtttttgtgaattgtaataatgaatatttaatttaatttctatttattt-atttct 417
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
Sbjct: 496 caaagtttttgtgaattgtaataatgattatttaatttaatttctattttttttatttat 437
Query: 418 gaatggagtattttcgcaatcatgtcttccatctctgacattctttcttctacttgactt 477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaatggagtattttctcaatcatgtcttccatctctgacattctttcttctacttgactt 377
Query: 478 aaccctattggtcagctttctactgtgttcaattcagtttttcactctccccctccagaa 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 376 aaccctattggtcagctttctactgtgttcaattcagtttttcactctcctcctccagaa 317
Query: 538 ctccaatttccttactcaaattttcacccaagatgatcctttcttattaacaactgcctt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctccaatttccttactcaaattttcacccaagatgatcctttcttattaacaactgcctt 257
Query: 598 ttatatcc 605
||||||||
Sbjct: 256 ttatatcc 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_h06.g1 MSMg01no489_h06.g1 CHROMAT_FILE:
MSMg01no489_h06.g1 PHD_FILE: MSMg01no489_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(567 letters)
>mm_chr12_10663988_10664954
Length = 967
Score = 1031 bits (533), Expect = 0.0
Identities = 554/561 (98%)
Strand = Plus / Plus
Query: 7 ttcaatacatcatcattcagcaatgccaccagaacttaaagcaggaacctggatgtagga 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 ttcaatacatcatcattcagcaatgccaccaaaacttaaagcaggaacctggatgtagga 266
Query: 67 attgaagcataggccatagaagtgtgctgcttacgagcctgcttctatggcttgttttct 126
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 267 attgaagcataggccatagaagtgtgctgcttactagcctgcttctatggcttgttttct 326
Query: 127 tatgtaatcccagactacatgcccagagatggcactactcacactgggttgggctgttcc 186
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 327 tatgtaatcccagactacatgcccagagatggcactacccacactgggttgggctgttcc 386
Query: 187 acatcaatcattaatcaagaaaatgccccatagatcagtctgatggagggaattcatctg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acatcaatcattaatcaagaaaatgccccatagatcagtctgatggagggaattcatctg 446
Query: 247 ccgcctcttgctctttccaggtgtgtcaagttgatgaaactagcacacaggagaggcatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccgcctcttgctctttccaggtgtgtcaagttgatgaaactagcacacaggagaggcatg 506
Query: 307 gcatcacttctgatgggatgtagaaaagaagagtagaagaaataaaaggagaatcacctg 366
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcatcacttctgatgggatgtaggaaagaagagtagaagaaataaaaggagaatcacctg 566
Query: 367 ctacttttgggctactcaggagttcagcagcaagcacagcaatggaaaggtactgggctg 426
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 567 ctacttttgggctactcaggagttcagcagcaagcgcagcaatgggaaggtactgggctg 626
Query: 427 ggcgtaggaacaaccttgaacactttcttctcaggagccagggcaatgattatcctgacc 486
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggcgtaggaacaaccttgagcactttcttctcaggagccagggcaatgattatcctgacc 686
Query: 487 ccagtgatcctgggctctctcaaggtactggaaatagccctgactcaaaagcaaaagctc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccagtgatcctgggctctctcaaggtactggaaatagccctgactcaaaagcaaaagctc 746
Query: 547 tttacaaagatggaaagtaat 567
|||||||||||||||||||||
Sbjct: 747 tttacaaagatggaaagtaat 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
