Query= MSMg01no489_j19.b1 MSMg01no489_j19.b1 CHROMAT_FILE:
MSMg01no489_j19.b1 PHD_FILE: MSMg01no489_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:54 2005
(662 letters)
>mm_chr12_51075430_51076491
Length = 1062
Score = 1031 bits (533), Expect = 0.0
Identities = 554/561 (98%)
Strand = Plus / Minus
Query: 102 agaagaaaagaaaagaaaagaaaagagaagaaaagagaagaaaagaaaagaaaagaaaag 161
|||||| |||| |||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 954 agaagagaagagaagagaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag 895
Query: 162 aaaagaaaagaaaagaaaagaaaagaaaagaaggtctcctttgctggactttgtgaaatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 aaaagaaaagaaaagaaaagaaaagaaaagaaggtctcctttgctggactttgtgaaatt 835
Query: 222 tactcacaggataacacccttcgaattgagtgacttgacttgtcatggctagccagcatt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tactcacaggataacacccttcgaattgagtgacttgacttgtcatggctagccagcatt 775
Query: 282 acaacacatctagtagccagctggcagatgtccaattgagtctaaggaatggccaagaag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acaacacatctagtagccagctggcagatgtccaattgagtctaaggaatggccaagaag 715
Query: 342 agaaatagtgatggaatttttcagaggctaggctatttgcttttgtgtgtttctagaaat 401
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 714 agaaatagtgatggaatttttcagaggctagggtatttgcttttgtgtgtttctagaaat 655
Query: 402 aattaggctgaattaggttcatgctcatggggaatggtgctttaagtttccaatttgaga 461
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aattaggctgaattaggtccatgctcatggggaatggtgctttaagtttccaatttgaga 595
Query: 462 ttcaaatgtcctcatttttctatgtctagagttccagccaacttgttagtaggataagga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcaaatgtcctcatttttctatgtctagagttccagccaacttgttagtaggataagga 535
Query: 522 tgtttgtattctttaagtcttctcttttaaaagctgtacaaatttgtccatttaataaat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtttgtattctttaagtcttctcttttaaaagctgtacaaatttgtccatttaataaat 475
Query: 582 agttcacacactggacagaaaccaagtggacaaactgtactcactaaccctttaatgctt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agttcacacactggacagaaaccaagtggacaaactgtactcactaaccctttaatgctt 415
Query: 642 ggctcctttgtaggctgaccc 662
|||||||||||||||||||||
Sbjct: 414 ggctcctttgtaggctgaccc 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_j19.g1 MSMg01no489_j19.g1 CHROMAT_FILE:
MSMg01no489_j19.g1 PHD_FILE: MSMg01no489_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:54 2005
(645 letters)
>mm_chr12_51035846_51036890
Length = 1045
Score = 1116 bits (577), Expect = 0.0
Identities = 638/679 (93%), Gaps = 35/679 (5%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttatttagttttctggagtccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tttgtttagctctgagccccattttttaatggggttatttagttttctggagtccacctt 227
Query: 61 cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 228 cttgagttctttatatatattgtatattagtcccctatctgatttaggataggtaaagat 287
Query: 121 cctttcccaatctgttggtggcctttttgtcttattgactgtgtcttttgccttgcagaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 288 cctttcccaatctgttggtggcctttttgtcttattgactgtctcttttgccttgcagaa 347
Query: 181 gctttgcagtttcatgaggtcccatttgtcaattctcaaatggtgctggcacaactggct 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 gctttgcagtttcatgaggtcccatttgtcaattctcgaatggtgctggcacaactggcg 407
Query: 241 tttatcatgtagaagaatgcgaatcgatccattcctatctccttgtactaaggtcaaatc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gttatcatgtagaagaatgcgaatcgatccattcctatctccttgtactaaggtcaaatc 467
Query: 301 taagtggatcaaggaactccacataaaaccagagacactgaaacttatagaggagtttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 taagtggatcaaggaactccacataaaaccagagacactgaaacttatagaggagtttaa 527
Query: 361 ctcttaaattgcgatcaacgttagaaaaaaaaatcctttagacttgtaaacaaaaccata 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 528 ctcttaaattgcgatcaacgttagaaaaaaaa-tcctttagacttgtaaacaaaaccata 586
Query: 421 tctctatctctgtctctatccctatatctat------------------ctctctctctc 462
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 587 tctctatctctgtctctatccctatatctatttatctctctctctctctctctctctctc 646
Query: 463 tatatatatatatatatacatatat----------ccacacacacatatacatacacata 512
|||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 647 tatatatatatatatatatatatatatatatatatccacacacacatatacatacacata 706
Query: 513 cacatac------cattgccattttggcaaaactgttctcattatacctattaaaatatc 566
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cacatacacataccattgccattttggcaaaactgttctcattatacctattaaaatatc 766
Query: 567 taaggttagaatatttaccactcttcttgccatcttaaccacattcacaattatttaaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 taaggttagaatatttaccactcttcttgccatcttaaccacattcacaattatttaaaa 826
Query: 627 tgaaacaaatgtctactta 645
|||||||||||||||||||
Sbjct: 827 tgaaacaaatgtctactta 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
