BAC Information

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BAC

Clone NameMSMg01-490F15
Chromosome12 (Build37)
Map Location 25,697,524 - 25,830,023
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490F15.T7 (MSMg01no490_f15.b1)MSMg01-490F15.TJ (MSMg01no490_f15.g1)
ACCAG568607AG568608
length765759
length of high quality
(start - end)		632 (71 - 702)593 (80 - 672)
definitionCHROMAT_FILE: MSMg01no490_f15.b1 PHD_FILE: MSMg01no490_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:55 2005CHROMAT_FILE: MSMg01no490_f15.g1 PHD_FILE: MSMg01no490_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,697,524 - 25,698,155)(25,829,431 - 25,830,023)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGATTTCTGAGTGACAAATGATAGCGCCAAGGTCAGGGGGG
TGTGTGATGCTGCATGTTGGATTTCTCTCTTGGCAGCCCAGGTTCTTGGG
GACCTATGGTTTCATCTACCTTTCCCATGCGTCAGGACTCGGGGGAGTGT
TCTTCTCTTAGGAGTGGGATACCTTAGCCACTCCAGCCCACTCTACAGGG
TGCCTTCAACTCTTTGAGGAAATGCCAGGGAAGTTAAGAGTGGCTGTGCC
TGGGATAAAATCGTGTTACACTTTAAAACACCCTAAAAATAGAGATGCTG
AATCCCTAGAACCATGAAGGAACTTACCTGCTTTATTGTTTTATGGCTCC
TAGTACGAGGCTTTATGGAGCTTGACCGTGATTTTCTTTACAGAGTTCTG
TGCACTTCTTATCTGAGACATTACGTTTTCTCTAACACATGGGATGCCTG
CCTGCCAACTCTACTGAGTCATTGCTCTGGAAAGTGCCTCAGAAGTGACT
GTACTTGACTAGCCTGCAATCTTTCTCTTTGGTTAATATTGTGAATTCTG
CTTTTCTTACCCACTGAGTTGGCTCTGCAGTCTGTTTTGTTGGTCTTACC
ATAAGCGTGCATGTTAACTCTCAAGGATGGGTGTTTCTCACTGGTGCTGT
TGTTTCAGGATACTTACCGCAGAAAGCAGATGCAGAGAACCATCACGAGG
CAGATGTCCTTTGAT

NNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCATAGAGATCCGCAGTC
AGTGCTCTGTGTCCCATGACCAGGAGTCACCGATCCTTTGCAGACAGTGA
CAATAAACACATCAAGCAATTTCTCTTCCTTAGGCTACCACCAATCTCAG
CCTTGAATGTGTGCTTAAGTAGATTATGTGTGAATAGTTTTACAACTTGG
AGGAAGGACACCTCGAGGAAGCCAAGCAAGCAATCTTTCCAACCAGATCC
ACTTGCATGGTGACCATAAACACACACACCACACACACTCAAATAAACTG
AAGGGCATTTGATTGACCTCTACAGGGGGAGGGGGCTGGGAGAAGTTCCA
GCACACCACAGGAGCACCTGTTGGGTGGAACGCAGGCCTCCAGCCATGTT
AAACTGAAGGTATGACTTAAAAACAAAGCATGCCAGGTGTGGTGCATGCC
TTAAATCCCAGCACTCTGGGAGGCAGAGGCAGGTGGATCTCTGTGAATTC
AAAGCCAGCCTGGTCTACATAGTGAGCTGCTGAATCACCAGGGTTGAGTG
TCCTCTAACACTCTGGATGACATTGGGCAGGGATTCGTGGGAACTCCCCC
ATCTCTCCTGCATGGATAAGAGAGATATTCGTTAAGTGCAGACTTCTCAN
TCGGGAGGCAGAGGGTGAGAGGTGTGGATGTGTTTCCTGTGCCTGTAGAA
TTGAGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_f15.b1 MSMg01no490_f15.b1 CHROMAT_FILE:
MSMg01no490_f15.b1 PHD_FILE: MSMg01no490_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:55 2005
         (632 letters)



>mm_chr12_25697324_25698355
          Length = 1032

 Score = 1222 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacaaatgatagcgccaaggtcaggggggtgtgtgatgctgcatgttggatttctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaaatgatagcgccaaggtcaggggggtgtgtgatgctgcatgttggatttctctct 260

                                                                       
Query: 61  tggcagcccaggttcttggggacctatggtttcatctacctttcccatgcgtcaggactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagcccaggttcttggggacctatggtttcatctacctttcccatgcgtcaggactc 320

                                                                       
Query: 121 gggggagtgttcttctcttaggagtgggataccttagccactccagcccactctacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggagtgttcttctcttaggagtgggataccttagccactccagcccactctacaggg 380

                                                                       
Query: 181 tgccttcaactctttgaggaaatgccagggaagttaagagtggctgtgcctgggataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccttcaactctttgaggaaatgccagggaagttaagagtggctgtgcctgggataaaa 440

                                                                       
Query: 241 tcgtgttacactttaaaacaccctaaaaatagagatgctgaatccctagaaccatgaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgtgttacactttaaaacaccctaaaaatagagatgctgaatccctagaaccatgaagg 500

                                                                       
Query: 301 aacttacctgctttattgttttatggctcctagtacgaggctttatggagcttgaccgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttacctgctttattgttttatggctcctagtacgaggctttatggagcttgaccgtg 560

                                                                       
Query: 361 attttctttacagagttctgtgcacttcttatctgagacattacgttttctctaacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttctttacagagttctgtgcacttcttatctgagacattacgttttctctaacacat 620

                                                                       
Query: 421 gggatgcctgcctgccaactctactgagtcattgctctggaaagtgcctcagaagtgact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggatgcctgcctgccaactctactgagtcattgctctggaaagtgcctcagaagtgact 680

                                                                       
Query: 481 gtacttgactagcctgcaatctttctctttggttaatattgtgaattctgcttttcttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtacttgactagcctgcaatctttctctttggttaatattgtgaattctgcttttcttac 740

                                                                       
Query: 541 ccactgagttggctctgcagtctgttttgttggtcttaccataagcgtgcatgttaactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccactgagttggctctgcagtctgttttgttggtcttaccataagcgtgcatgttaactc 800

                                           
Query: 601 tcaaggatgggtgtttctcactggtgctgttg 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 tcaaggatgggtgtttctcactggtgctgttg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_f15.g1 MSMg01no490_f15.g1 CHROMAT_FILE:
MSMg01no490_f15.g1 PHD_FILE: MSMg01no490_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:55 2005
         (593 letters)



>mm_chr12_25829422_25830414
          Length = 993

 Score = 1147 bits (593), Expect = 0.0
 Identities = 593/593 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcatagagatccgcagtcagtgctctgtgtcccatgaccaggagtcaccgatccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cagtcatagagatccgcagtcagtgctctgtgtcccatgaccaggagtcaccgatccttt 543

                                                                       
Query: 61  gcagacagtgacaataaacacatcaagcaatttctcttccttaggctaccaccaatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gcagacagtgacaataaacacatcaagcaatttctcttccttaggctaccaccaatctca 483

                                                                       
Query: 121 gccttgaatgtgtgcttaagtagattatgtgtgaatagttttacaacttggaggaaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gccttgaatgtgtgcttaagtagattatgtgtgaatagttttacaacttggaggaaggac 423

                                                                       
Query: 181 acctcgaggaagccaagcaagcaatctttccaaccagatccacttgcatggtgaccataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acctcgaggaagccaagcaagcaatctttccaaccagatccacttgcatggtgaccataa 363

                                                                       
Query: 241 acacacacaccacacacactcaaataaactgaagggcatttgattgacctctacaggggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acacacacaccacacacactcaaataaactgaagggcatttgattgacctctacaggggg 303

                                                                       
Query: 301 agggggctgggagaagttccagcacaccacaggagcacctgttgggtggaacgcaggcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agggggctgggagaagttccagcacaccacaggagcacctgttgggtggaacgcaggcct 243

                                                                       
Query: 361 ccagccatgttaaactgaaggtatgacttaaaaacaaagcatgccaggtgtggtgcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccagccatgttaaactgaaggtatgacttaaaaacaaagcatgccaggtgtggtgcatgc 183

                                                                       
Query: 421 cttaaatcccagcactctgggaggcagaggcaggtggatctctgtgaattcaaagccagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttaaatcccagcactctgggaggcagaggcaggtggatctctgtgaattcaaagccagc 123

                                                                       
Query: 481 ctggtctacatagtgagctgctgaatcaccagggttgagtgtcctctaacactctggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctggtctacatagtgagctgctgaatcaccagggttgagtgtcctctaacactctggatg 63

                                                                
Query: 541 acattgggcagggattcgtgggaactcccccatctctcctgcatggataagag 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  acattgggcagggattcgtgggaactcccccatctctcctgcatggataagag 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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