BAC Information

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BAC

Clone NameMSMg01-490I16
Chromosome12 (Build37)
Map Location 69,813,470 - 69,813,709
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I16.T7 (MSMg01no490_i16.b1)MSMg01-490I16.TJ (MSMg01no490_i16.g1)
ACCAG568752AG568753
length775763
length of high quality
(start - end)
243 (79 - 321)682 (78 - 759)
definitionCHROMAT_FILE: MSMg01no490_i16.b1 PHD_FILE: MSMg01no490_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:09 2005CHROMAT_FILE: MSMg01no490_i16.g1 PHD_FILE: MSMg01no490_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATTATAATTTGCGGGCGCTAAACGAATCACTNAATCAGAGTCAGGGC
GGNAATCCTTGGTTTACGTAAACAGGTGAAGAATCATACAAAGTAAATTA
ACAAAATAAGAAAAAAAAGCAATCTCTCAAATCTTTAAAGAGGTAGTTTA
ATTTAAATTATTTTAAAATAATTATTTTGTTTATTTGTATATTTTCAAAA
AATTTGATACCACCAAAATGATGCTACTTACAATTAATAGCTGATCTGAG
AGTTTAAAACAAATTTTCTTCATTGAAGGTACACCAAAATATTATTCACA
TTTCAGGGCTGGCCTCAGGNAATTATTAGATGGCCAGCACAAAGCCAACT
CCATGGGATGTTTTGTTTGTTTGTTTGGGGGGTTGTTTTGTGGTGTTGTA
ATTTTTTGTTTTATTCCCCCCCCCCTTTTTATTTTATTTTCTTTTCTAAA
CAGTGTTTTTTGTTGTCTTATTATATGCCTATTGTTTTCTTTATTTTTTA
CTTCTCTTGCCCTGTTGTTGCTTTTTTTTATATACTTTTTTCTTCTTTCT
ATCTCGTCTTTTTTTTGTTTTTTTTTCTTTGAGATTTCTTGTTTCCTTGG
TATTATTACTTTGTTTTAGTGTTTTAGGGAGTTATTTTTAGCTCGTGAGA
AATTTATTTTTTTTTTTTTTTATTTACCCTTTGTTTTAGGGACTAAGTTT
TTTTTTCTGATTTTCTATCCCTTTTTTTTTTTATGGATACAAACATTCAT
ATATATTGTTCCCTAATTTTATTAT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATACACTAAATCTGGTAGAAG
AGAAACTGAGAATAGCCTTGGACTCATTGGCACAAGAAAAGGCTTTCTTA
GCAGAACATTGCTAGTACAAGCACTAAGATAAACAATTAATAAATAAAAG
TATATGAAACTGAAAATCTTCTGCATTGCAAATGCCACCACCAATTGAAC
AGAGCAGCAGCCTACACAACGGGGAAATTTTTTACCAAATACATGTCTAA
TAGAGAACAAATTCATAAAACATATATTCAATGGAAAAACTAGGTAACAA
GAAAGCAAATAACCCAATTAAAAAATAGGGTACCGATCTAAATAGGATTC
TCAAAAGAGGATATAAGTGGCTGAGAAACACACAAAGAAATGTCCAACAC
CCTTAGTCATCAGGGAAATGTAAATCAAAACTACTTTGAAATTTCATCTT
ACACTTGTCAGAATGGCTAAGATCAATAAAACATGACAGCTCATGCTGGC
TAGGATGTGGAGTAAGTGGAACAATCATCCATTGCTCGTGGGAGTGCAAA
CTGGTACAGCCACTGGGGAAATCAATGTGGTGGTTCCTCAGGAATATGGA
AATTGATCTATCTCAAGGTCCAGAGATACCACTCTTGTGCATATACCCAA
AGGACACATGCTCAGCCATGTTCATTAGTGTCCTATTAATAATAGTCAGA
GTTGAAAACAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i16.b1 MSMg01no490_i16.b1 CHROMAT_FILE:
MSMg01no490_i16.b1 PHD_FILE: MSMg01no490_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:09 2005
         (243 letters)



>mm_chr12_69813270_69813911
          Length = 642

 Score =  443 bits (229), Expect = e-129
 Identities = 238/243 (97%), Gaps = 5/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatcatacaaagtaaattaacaaaataagaaaaaaaagcaatctctcaaatctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaatcatacaaagtaaattaacaaaataagaaaaaaaagcaatctctcaaatctttaa 260

                                                                       
Query: 61  agaggtagtttaatttaaattattttaaaataattattttgtttatttgtatattttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtagtttaatttaaattattttaaaataattattttgtttatttgtatattttcaa 320

                                                                       
Query: 121 aaaatttgataccaccaaaatgatgctacttacaattaatagctgatctgagagttt--a 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 321 aaaatttgataccaccaaaatgatgctacttacaattaatagctgatctgagag---gga 377

                                                                       
Query: 179 aaacaaattttcttcattgaaggtacaccaaaatattattcacatttcagggctggcctc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaacaaattttcttcattgaaggtacaccaaaatattattcacatttcagggctggcctc 437

              
Query: 239 agg 241
           |||
Sbjct: 438 agg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)